Variant report

Variant	rs10829157
Chromosome Location	chr10:18951463-18951464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:18951398-18951476	K562	blood:	n/a	n/a
2	CHD1	chr10:18946884-18951792	IMR90	lung:	n/a	chr10:18948546-18948556 chr10:18948735-18948745
3	POLR2A	chr10:18946803-18951639	IMR90	lung:	n/a	n/a
4	POLR2A	chr10:18950080-18951470	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:18947800..18949870-chr10:18951360..18954331,4	MCF-7	breast:
2	chr10:18946565..18950911-chr10:18951359..18956154,6	MCF-7	breast:
3	chr10:18937279..18942257-chr10:18944156..18951752,16	MCF-7	breast:

Variant related genes	Relation type
ARL5B-AS1	TF binding region
ENSG00000152487	Chromatin interaction
ENSG00000165997	Chromatin interaction
ENSG00000241058	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10732437	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741120	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10741131	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10764587	1.00[ASN][1000 genomes]
rs10764661	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829156	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829199	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1917209	1.00[ASN][1000 genomes]
rs1917823	1.00[ASN][1000 genomes]
rs4316423	0.86[EUR][1000 genomes]
rs4338439	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4456162	1.00[ASN][1000 genomes]
rs4475830	1.00[ASN][1000 genomes]
rs4606373	1.00[ASN][1000 genomes]
rs4634984	1.00[ASN][1000 genomes]
rs4636555	1.00[ASN][1000 genomes]
rs4748479	1.00[ASN][1000 genomes]
rs4748493	1.00[ASN][1000 genomes]
rs4748494	1.00[ASN][1000 genomes]
rs4748502	0.88[EUR][1000 genomes]
rs4748504	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748505	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4748507	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62636215	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6482534	1.00[ASN][1000 genomes]
rs6482545	0.89[ASN][1000 genomes]
rs6482546	0.89[ASN][1000 genomes]
rs6482565	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6482567	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075678	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7077786	1.00[ASN][1000 genomes]
rs7081435	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082235	1.00[ASN][1000 genomes]
rs7084709	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7090926	0.89[ASN][1000 genomes]
rs7093907	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095666	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098721	1.00[ASN][1000 genomes]
rs7099307	1.00[ASN][1000 genomes]
rs7100884	1.00[ASN][1000 genomes]
rs7895709	1.00[ASN][1000 genomes]
rs7895775	1.00[ASN][1000 genomes]
rs7908550	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909552	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911922	1.00[ASN][1000 genomes]
rs7918933	1.00[ASN][1000 genomes]
rs7922241	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7923072	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8181345	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9731044	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv466762	chr10:18932172-18976659	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv550121	chr10:18932172-18976659	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18947400-18951600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:18949000-18954000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:18949400-18973200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:18949600-18951600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr10:18949600-18951800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:18949600-18952400	Enhancers	Primary T cells fromperipheralblood	blood
7	chr10:18949600-18952400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:18949600-18953800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:18949600-18957000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr10:18949600-18972000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:18949800-18951600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:18949800-18952200	Enhancers	Small Intestine	intestine
13	chr10:18949800-18956600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:18950000-18953800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:18950000-18956600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:18950000-18957600	Weak transcription	Fetal Stomach	stomach
17	chr10:18950200-18953600	Weak transcription	Lung	lung
18	chr10:18950200-18954600	Weak transcription	HSMM	muscle
19	chr10:18950200-18956000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:18950200-18956800	Weak transcription	Left Ventricle	heart
21	chr10:18950200-18957000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:18950200-18957000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr10:18950200-18957600	Weak transcription	Placenta	Placenta
24	chr10:18950400-18951600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:18950400-18951600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:18950400-18953400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:18950400-18957000	Weak transcription	Adipose Nuclei	Adipose
28	chr10:18950600-18951800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr10:18950800-18951600	Enhancers	Fetal Heart	heart
30	chr10:18950800-18952200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr10:18950800-18953600	Weak transcription	Ovary	ovary
32	chr10:18950800-18954000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:18950800-18954000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:18950800-18954000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:18950800-18954200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:18950800-18954400	Weak transcription	NHDF-Ad	bronchial
37	chr10:18950800-18955600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:18950800-18956000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr10:18950800-18956000	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr10:18950800-18956000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr10:18950800-18962400	Weak transcription	Fetal Kidney	kidney
42	chr10:18951000-18951600	Weak transcription	Fetal Intestine Small	intestine
43	chr10:18951000-18952000	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:18951000-18952200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:18951000-18952400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:18951000-18953600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr10:18951000-18953600	Weak transcription	Right Ventricle	heart
48	chr10:18951000-18953800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:18951000-18953800	Weak transcription	Stomach Mucosa	stomach
50	chr10:18951000-18953800	Weak transcription	Thymus	Thymus

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