Variant report

Variant	rs4748493
Chromosome Location	chr10:18898701-18898702
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18897158..18899309-chr10:18901969..18904753,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10732437	1.00[ASN][1000 genomes]
rs10741083	0.81[CEU][hapmap]
rs10741086	1.00[CHB][hapmap]
rs10764587	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10764661	1.00[ASN][1000 genomes]
rs10828970	0.82[AFR][1000 genomes]
rs10829156	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10829157	1.00[ASN][1000 genomes]
rs10829199	1.00[ASN][1000 genomes]
rs11015099	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11015306	0.80[YRI][hapmap]
rs11015307	0.82[YRI][hapmap]
rs12411654	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1917209	1.00[ASN][1000 genomes]
rs1917823	1.00[ASN][1000 genomes]
rs4237348	0.96[CEU][hapmap]
rs4335438	0.96[CEU][hapmap]
rs4338439	1.00[ASN][1000 genomes]
rs4456162	1.00[CHB][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4475829	0.82[AFR][1000 genomes]
rs4475830	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4484992	1.00[CHB][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes]
rs4606373	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4628581	0.89[CEU][hapmap]
rs4634984	1.00[ASN][1000 genomes]
rs4636555	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4748476	1.00[CHB][hapmap]
rs4748477	0.82[CEU][hapmap]
rs4748479	1.00[ASN][1000 genomes]
rs4748494	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748495	0.83[AMR][1000 genomes]
rs4748504	1.00[ASN][1000 genomes]
rs4748507	1.00[ASN][1000 genomes]
rs62636215	0.89[ASN][1000 genomes]
rs6482534	1.00[CHB][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6482545	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6482546	0.89[ASN][1000 genomes]
rs6482567	1.00[ASN][1000 genomes]
rs7075151	0.82[AFR][1000 genomes]
rs7075678	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7077786	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7081435	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7082235	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7090926	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7092437	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs7093907	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7095666	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7098721	1.00[ASN][1000 genomes]
rs7099307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100884	1.00[ASN][1000 genomes]
rs7895709	1.00[CHB][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7895775	1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7908550	1.00[ASN][1000 genomes]
rs7909552	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7911922	1.00[ASN][1000 genomes]
rs7918933	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7920997	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7923072	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8181345	1.00[ASN][1000 genomes]
rs9731044	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv2757371	chr10:18835325-18906507	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2759736	chr10:18835325-18906507	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv466760	chr10:18839350-18905935	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv550044	chr10:18839350-18905935	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18846200-18899200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:18848400-18915800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr10:18849800-18910800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:18863000-18910800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:18863800-18902200	Weak transcription	Brain Anterior Caudate	brain
6	chr10:18866600-18899400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:18867600-18899600	Weak transcription	Placenta	Placenta
8	chr10:18867800-18900400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:18867800-18916400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:18868000-18902200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:18868000-18916200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:18868200-18904800	Weak transcription	HSMMtube	muscle
13	chr10:18869800-18910800	Weak transcription	Right Ventricle	heart
14	chr10:18870200-18900600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:18870600-18908400	Weak transcription	Brain Substantia Nigra	brain
16	chr10:18870600-18916000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:18871600-18910000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:18872400-18899600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:18872800-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:18873200-18908200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr10:18873600-18916000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:18875000-18916000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:18875600-18900600	Weak transcription	Esophagus	oesophagus
24	chr10:18875600-18912600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:18877200-18899200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:18877200-18899400	Weak transcription	K562	blood
27	chr10:18877200-18899600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr10:18877200-18916200	Weak transcription	Thymus	Thymus
29	chr10:18877200-18916400	Weak transcription	Spleen	Spleen
30	chr10:18877400-18916200	Weak transcription	Pancreas	Pancrea
31	chr10:18877400-18916400	Weak transcription	Psoas Muscle	Psoas
32	chr10:18877600-18900000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:18877600-18916400	Weak transcription	Gastric	stomach
34	chr10:18878000-18915600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr10:18881400-18916400	Weak transcription	Brain Angular Gyrus	brain
36	chr10:18882000-18916200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr10:18882200-18899400	Strong transcription	Liver	Liver
38	chr10:18884200-18899800	Weak transcription	Fetal Lung	lung
39	chr10:18884200-18900200	Weak transcription	Fetal Brain Female	brain
40	chr10:18884200-18900400	Weak transcription	Ovary	ovary
41	chr10:18884200-18900600	Weak transcription	Brain Germinal Matrix	brain
42	chr10:18884200-18916400	Weak transcription	Aorta	Aorta
43	chr10:18884400-18900600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr10:18884600-18900200	Weak transcription	Fetal Thymus	thymus
45	chr10:18884600-18916400	Weak transcription	Brain Hippocampus Middle	brain
46	chr10:18884800-18909400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr10:18885200-18901200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:18885200-18904400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:18885400-18900200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr10:18885400-18900600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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