Variant report

Variant	rs4628581
Chromosome Location	chr10:18799890-18799891
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18794828..18796940-chr10:18797729..18800286,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10741083	0.89[TSI][hapmap]
rs10741088	0.85[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10741089	0.92[EUR][1000 genomes]
rs11014577	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12764916	0.89[CEU][hapmap];0.89[TSI][hapmap]
rs4237348	0.82[ASW][hapmap];0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.95[LWK][hapmap];0.84[MEX][hapmap];0.94[MKK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4335438	0.92[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4350266	0.92[ASN][1000 genomes]
rs4402184	0.82[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4748477	0.91[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.84[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4748493	0.89[CEU][hapmap]
rs4748494	0.85[CEU][hapmap]
rs7092620	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7099307	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4628581	MEIG1	cis	cerebellum	SCAN
rs4628581	NSUN6	cis	parietal	SCAN
rs4628581	PTPLA	cis	cerebellum	SCAN
rs4628581	NSUN6	cis	cerebellum	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18775600-18800600	Weak transcription	Fetal Intestine Large	intestine
3	chr10:18776200-18809400	Weak transcription	Right Ventricle	heart
4	chr10:18776200-18812200	Weak transcription	Right Atrium	heart
5	chr10:18778600-18818200	Weak transcription	Fetal Intestine Small	intestine
6	chr10:18779600-18803200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:18781000-18803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:18785400-18808400	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:18786800-18802000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:18787400-18807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:18787400-18808200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:18787400-18810200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:18787600-18803200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:18788000-18801800	Weak transcription	Fetal Stomach	stomach
15	chr10:18788200-18808400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:18788200-18809600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:18789800-18807800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:18790600-18802000	Weak transcription	Left Ventricle	heart
19	chr10:18790800-18800600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:18790800-18801600	Weak transcription	Liver	Liver
21	chr10:18791000-18807200	Weak transcription	Brain Anterior Caudate	brain
22	chr10:18792400-18825400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:18794000-18818400	Weak transcription	Fetal Brain Male	brain
24	chr10:18795000-18800600	Weak transcription	Ovary	ovary
25	chr10:18795000-18801400	Weak transcription	Fetal Lung	lung
26	chr10:18795000-18803200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:18795000-18807200	Weak transcription	Aorta	Aorta
28	chr10:18795400-18800800	Weak transcription	Fetal Heart	heart
29	chr10:18795600-18801600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr10:18798200-18800200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:18798400-18801600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:18798800-18801200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:18799800-18803400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:18799800-18825200	Weak transcription	Colonic Mucosa	Colon

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