Variant report

Variant	rs7079776
Chromosome Location	chr10:18830669-18830670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NSUN6-1	chr10:18830515-18831106	ENSG00000240291.1

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10764584	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10764587	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10828879	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10828901	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10828906	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014830	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11014852	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1917209	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4328135	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4747353	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62636215	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6482516	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7082235	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7904365	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7910506	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7911922	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7918933	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042073	chr10:18806900-18838303	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	esv1793653	chr10:18827828-18888369	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv1794817	chr10:18827828-18888369	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv1811259	chr10:18827828-18888369	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	esv1840241	chr10:18827828-18888369	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv1841068	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv1851495	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18815200-18843600	Weak transcription	A549	lung
2	chr10:18816400-18841800	Strong transcription	Liver	Liver
3	chr10:18820800-18841600	Weak transcription	Hela-S3	cervix
4	chr10:18822000-18840400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:18822000-18848000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:18822400-18833600	Strong transcription	Primary T cells from cord blood	blood
7	chr10:18822800-18841800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:18823200-18831200	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:18823400-18834800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:18823600-18831000	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr10:18823600-18836600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:18824200-18831200	Strong transcription	Fetal Stomach	stomach
13	chr10:18824200-18831600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:18824200-18834800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:18824200-18846200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:18824200-18850600	Weak transcription	NHLF	lung
17	chr10:18825000-18835800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:18825400-18831200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:18825600-18831000	Strong transcription	Primary hematopoietic stem cells	blood
20	chr10:18825600-18841800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:18826400-18831200	Strong transcription	Fetal Muscle Trunk	muscle
22	chr10:18826800-18831200	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:18826800-18831400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr10:18827000-18831000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:18827000-18831000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:18827000-18831000	Strong transcription	Adipose Nuclei	Adipose
27	chr10:18827000-18831200	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr10:18827000-18831200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:18827000-18835800	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr10:18827200-18831200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:18827200-18842000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:18827200-18845200	Weak transcription	NHEK	skin
33	chr10:18827400-18831000	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr10:18827400-18831600	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:18827400-18841600	Weak transcription	HMEC	breast
36	chr10:18827600-18839400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:18828000-18831000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:18828200-18831000	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr10:18828200-18835000	Weak transcription	Fetal Brain Male	brain
40	chr10:18828400-18831200	Strong transcription	Fetal Thymus	thymus
41	chr10:18828600-18837800	Weak transcription	Psoas Muscle	Psoas
42	chr10:18828600-18838800	Weak transcription	Colonic Mucosa	Colon
43	chr10:18828600-18841600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr10:18828600-18841600	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr10:18828600-18841800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr10:18828600-18841800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr10:18828600-18841800	Weak transcription	Pancreas	Pancrea
48	chr10:18828600-18843000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr10:18828600-18843400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:18828600-18844400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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