Variant report

Variant	esv20899
Chromosome Location	chr10:92617266-92618168
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr10:92617493-92617812	K562	blood:	n/a	chr10:92617766-92617782 chr10:92617763-92617779 chr10:92617594-92617610 chr10:92617543-92617559
2	BHLHE40	chr10:92617428-92617640	GM12878	blood:	n/a	chr10:92617594-92617610 chr10:92617543-92617559
3	CCNT2	chr10:92617232-92618061	K562	blood:	n/a	chr10:92617798-92617807
4	CEBPB	chr10:92617975-92618349	MCF-7	breast:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
5	CEBPB	chr10:92617968-92618348	H1-hESC	embryonic stem cell:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
6	CEBPB	chr10:92617982-92618322	Hela-S3	cervix:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
7	CEBPB	chr10:92618021-92618329	K562	blood:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
8	CEBPB	chr10:92617942-92618348	ECC-1	luminal epithelium:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
9	CEBPB	chr10:92618002-92618341	MCF-7	breast:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
10	CEBPB	chr10:92617873-92618405	A549	lung:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
11	CEBPB	chr10:92618031-92618378	ECC-1	luminal epithelium:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
12	CEBPB	chr10:92617970-92618334	IMR90	lung:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
13	CEBPB	chr10:92618057-92618317	HepG2	liver:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
14	CEBPB	chr10:92617998-92618357	A549	lung:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
15	CEBPB	chr10:92617444-92617517	H1-hESC	embryonic stem cell:	n/a	n/a
16	CEBPB	chr10:92617987-92618319	A549	lung:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
17	CHD1	chr10:92617231-92617705	H1-hESC	embryonic stem cell:	n/a	n/a
18	CHD1	chr10:92618037-92618077	H1-hESC	embryonic stem cell:	n/a	n/a
19	CHD1	chr10:92617501-92617653	GM12878	blood:	n/a	n/a
20	CHD2	chr10:92617375-92617378	HepG2	liver:	n/a	n/a
21	CHD2	chr10:92617994-92618051	Hela-S3	cervix:	n/a	chr10:92618007-92618017
22	CHD2	chr10:92617832-92617972	K562	blood:	n/a	n/a
23	CREB1	chr10:92617269-92617709	A549	lung:	n/a	n/a
24	CTBP2	chr10:92616709-92618174	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr10:92617500-92617650	GM12866	blood:	n/a	chr10:92617551-92617564 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
26	CTCF	chr10:92617460-92617610	GM12873	blood:	n/a	chr10:92617551-92617564 chr10:92617548-92617566 chr10:92617549-92617565
27	CTCF	chr10:92617920-92618070	HMEC	breast:	n/a	n/a
28	CTCF	chr10:92617927-92618000	Fibrobl	skin:	n/a	n/a
29	CTCF	chr10:92617431-92617675	LNCaP	prostate:	n/a	chr10:92617551-92617564 chr10:92617645-92617658 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
30	CTCF	chr10:92617357-92617701	HepG2	liver:	n/a	chr10:92617551-92617564 chr10:92617645-92617658 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
31	CTCF	chr10:92617740-92617890	HA-sp	spinal cord:	n/a	n/a
32	CTCF	chr10:92617540-92617690	HEK293	kidney:	n/a	chr10:92617551-92617564 chr10:92617645-92617658 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
33	CTCF	chr10:92617500-92617650	HBMEC	blood vessel:	n/a	chr10:92617551-92617564 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
34	CTCF	chr10:92617500-92617650	HFF-Myc	foreskin:	n/a	chr10:92617551-92617564 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
35	CTCF	chr10:92617460-92617610	AoAF	blood vessel:	n/a	chr10:92617551-92617564 chr10:92617548-92617566 chr10:92617549-92617565
36	CTCF	chr10:92617880-92618030	HMF	breast:	n/a	n/a
37	CTCF	chr10:92617220-92617370	WI-38	lung:	n/a	n/a
38	CTCF	chr10:92617435-92617670	GM10266	blood:	n/a	chr10:92617551-92617564 chr10:92617645-92617658 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
39	CTCF	chr10:92617440-92617590	Caco-2	colon:	n/a	chr10:92617551-92617564 chr10:92617548-92617566 chr10:92617549-92617565
40	CTCF	chr10:92617425-92617688	Lung_OC	lung:	n/a	chr10:92617551-92617564 chr10:92617645-92617658 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
41	CTCF	chr10:92617880-92618030	SAEC	small airway:	n/a	n/a
42	CTCF	chr10:92617400-92617550	WI-38	lung:	n/a	n/a
43	CTCF	chr10:92617414-92617776	GM19240	blood:	n/a	chr10:92617551-92617564 chr10:92617645-92617658 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
44	CTCF	chr10:92617500-92617650	AG09319	gingival:	n/a	chr10:92617551-92617564 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
45	CTCF	chr10:92617407-92617677	A549	lung:	n/a	chr10:92617551-92617564 chr10:92617645-92617658 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
46	CTCF	chr10:92617440-92617590	GM12871	blood:	n/a	chr10:92617551-92617564 chr10:92617548-92617566 chr10:92617549-92617565
47	CTCF	chr10:92617440-92617590	HVMF	connective:	n/a	chr10:92617551-92617564 chr10:92617548-92617566 chr10:92617549-92617565
48	CTCF	chr10:92617460-92617610	AG09319	gingival:	n/a	chr10:92617551-92617564 chr10:92617548-92617566 chr10:92617549-92617565
49	CTCF	chr10:92617500-92617650	MCF-7	breast:	n/a	chr10:92617551-92617564 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
50	CTCF	chr10:92617431-92617666	K562	blood:	n/a	chr10:92617551-92617564 chr10:92617645-92617658 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:92618033-92618083	HMEC	breast:	n/a
2	chr10:92617735-92617785	AG10803	skin:	n/a
3	chr10:92617735-92617785	AG09319	gingival:	n/a
4	chr10:92617429-92617479	HCPEpiC	choroid plexus:	n/a
5	chr10:92618141-92618191	RPTEC	kidney:	n/a
6	chr10:92617429-92617479	HL-60	blood:	n/a
7	chr10:92618033-92618083	HCT-116	colon:	n/a
8	chr10:92617429-92617479	PrEC	prostate:	n/a
9	chr10:92618033-92618083	RPTEC	kidney:	n/a
10	chr10:92618141-92618191	AG10803	skin:	n/a
11	chr10:92618141-92618191	PFSK-1	brain:	n/a
12	chr10:92618033-92618083	MCF-7	breast:	n/a
13	chr10:92618033-92618083	HL-60	blood:	n/a
14	chr10:92618063-92618113	AG09319	gingival:	n/a
15	chr10:92618033-92618083	U87	brain:	n/a
16	chr10:92617915-92617965	Hepatocyte	liver:	n/a
17	chr10:92617429-92617479	IMR90	lung:	fetal
18	chr10:92617429-92617479	MCF10A-Er-Src	breast:	n/a
19	chr10:92618141-92618191	AG04450	lung:	fetal
20	chr10:92618033-92618083	HEEpiC	esophagus:	n/a
21	chr10:92617735-92617785	HMEC	breast:	n/a
22	chr10:92617915-92617965	NT2-D1	testis:	n/a
23	chr10:92617915-92617965	IMR90	lung:	fetal
24	chr10:92617915-92617965	H1-hESC	embryonic stem cell:	embryo
25	chr10:92618063-92618113	NT2-D1	testis:	n/a
26	chr10:92617562-92617612	Hepatocyte	liver:	n/a
27	chr10:92618063-92618113	PFSK-1	brain:	n/a
28	chr10:92618033-92618083	HNPCEpiC	eye:	n/a
29	chr10:92618141-92618191	HCT-116	colon:	n/a
30	chr10:92617562-92617612	RPTEC	kidney:	n/a
31	chr10:92618063-92618113	NB4	blood:	n/a
32	chr10:92618141-92618191	GM19239	blood:	n/a
33	chr10:92618063-92618113	NH-A	brain:	n/a
34	chr10:92617429-92617479	Jurkat	blood:	n/a
35	chr10:92617429-92617479	RPTEC	kidney:	n/a
36	chr10:92617562-92617612	SK-N-SH_RA	brain:	n/a
37	chr10:92618033-92618083	HEK293	kidney:	embryo
38	chr10:92617735-92617785	A549	lung:	n/a
39	chr10:92617735-92617785	GM12892	blood:	n/a
40	chr10:92617915-92617965	HUVEC	blood vessel:	n/a
41	chr10:92617735-92617785	SK-N-MC	brain:	n/a
42	chr10:92618033-92618083	HRE	kidney:	n/a
43	chr10:92618141-92618191	HRCEpiC	kidney:	n/a
44	chr10:92618141-92618191	ovcar-3	ovarian:	n/a
45	chr10:92617735-92617785	U87	brain:	n/a
46	chr10:92618033-92618083	ECC-1	luminal epithelium:	n/a
47	chr10:92617735-92617785	SKMC	muscle:	n/a
48	chr10:92618141-92618191	K562	blood:	n/a
49	chr10:92617562-92617612	GM12892	blood:	n/a
50	chr10:92618063-92618113	SK-N-MC	brain:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:92617261..92617781-chr12:1100112..1100745,2	HCT-116	colon:
2	chr10:92617446..92619942-chr10:92629114..92632072,2	K562	blood:
3	chr10:92618080..92620435-chr10:92621216..92622913,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPP30-1	chr10:92618126-92618250	NONHSAT015601
2	lnc-RPP30-1	chr10:92618127-92618250	XLOC_008558

Variant related genes	Relation type
HTR7	TF binding region
HTR7	CpG island
ENSG00000148688	chromatin interactions
ENSG00000082805	chromatin interactions
ENSG00000250132	chromatin interactions
DNAJC13	miRNA target sites

Extended variants
information (count: 35 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs548818009	chr10:92617318-92617319	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs568583211	chr10:92617326-92617327	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs535315419	chr10:92617364-92617365	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs372358945	chr10:92617380-92617381	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs550747075	chr10:92617411-92617412	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs201619956	chr10:92617423-92617424	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs569440337	chr10:92617438-92617439	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs12762898	chr10:92617465-92617466	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs538343209	chr10:92617488-92617489	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs558308303	chr10:92617525-92617526	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs565628134	chr10:92617536-92617537	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs534613886	chr10:92617543-92617544	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs113799232	chr10:92617601-92617602	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
14	rs11186339	chr10:92617609-92617610	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs71503901	chr10:92617659-92617660	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs190139134	chr10:92617735-92617736	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs557192033	chr10:92617736-92617737	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs150729685	chr10:92617760-92617761	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
19	rs563194789	chr10:92617768-92617769	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
20	rs71025329	chr10:92617840-92617841	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs546280630	chr10:92617855-92617856	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs559492621	chr10:92617869-92617870	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs528460357	chr10:92617899-92617900	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs542174131	chr10:92617973-92617974	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs575864432	chr10:92617974-92617975	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs531088160	chr10:92618034-92618035	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs550808514	chr10:92618036-92618037	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs570700947	chr10:92618060-92618061	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs532086643	chr10:92618063-92618064	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs552200919	chr10:92618071-92618072	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs73315640	chr10:92618106-92618107	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs534574336	chr10:92618114-92618115	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs565119034	chr10:92618121-92618122	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs369820976	chr10:92618127-92618128	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
35	rs554249084	chr10:92618161-92618162	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD

Chromatin state (count:226 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92614400-92618600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:92614400-92618800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr10:92614400-92619000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:92614800-92618600	Bivalent/Poised TSS	Fetal Brain Female	brain
5	chr10:92614800-92619200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr10:92615000-92618200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr10:92615200-92618200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:92615400-92617400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr10:92615400-92618600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:92615800-92618000	Active TSS	Osteobl	bone
11	chr10:92615800-92618400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr10:92616000-92617600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
13	chr10:92616000-92618000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:92616000-92618000	Active TSS	Muscle Satellite Cultured Cells	--
15	chr10:92616000-92618000	Active TSS	HMEC	breast
16	chr10:92616000-92618600	Bivalent/Poised TSS	Fetal Stomach	stomach
17	chr10:92616200-92618400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:92616400-92617400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
19	chr10:92616600-92617400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:92616600-92617400	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
21	chr10:92616600-92617400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
22	chr10:92616600-92617400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:92616600-92617400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:92616600-92617400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
25	chr10:92616600-92617600	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
26	chr10:92616600-92618400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:92616600-92618600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
28	chr10:92616800-92617400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:92616800-92617400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:92616800-92617400	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
31	chr10:92616800-92617400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
32	chr10:92616800-92617400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
33	chr10:92616800-92617400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
34	chr10:92616800-92617400	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
35	chr10:92616800-92617400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:92616800-92617400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:92616800-92617400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:92616800-92617400	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
39	chr10:92616800-92617400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
40	chr10:92616800-92617400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
41	chr10:92616800-92617400	Flanking Bivalent TSS/Enh	Placenta	Placenta
42	chr10:92616800-92617400	Flanking Active TSS	Ovary	ovary
43	chr10:92616800-92617400	Flanking Active TSS	Pancreas	Pancrea
44	chr10:92616800-92617400	Transcr. at gene 5' and 3'	Right Atrium	heart
45	chr10:92616800-92617400	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
46	chr10:92616800-92617400	Flanking Bivalent TSS/Enh	Thymus	Thymus
47	chr10:92616800-92617400	Bivalent/Poised TSS	HUVEC	blood vessel
48	chr10:92616800-92617600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:92616800-92617600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
50	chr10:92616800-92617600	Flanking Active TSS	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links