Variant report

Variant	rs570700947
Chromosome Location	chr10:92618060-92618061
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:92617871-92618257	U87	brain:	n/a	n/a
2	CHD1	chr10:92618037-92618077	H1-hESC	embryonic stem cell:	n/a	n/a
3	HMGN3	chr10:92617364-92618091	K562	blood:	n/a	n/a
4	CTCF	chr10:92617155-92618170	SK-N-SH	brain:	n/a	chr10:92617551-92617564 chr10:92617645-92617658 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
5	SIN3A	chr10:92615640-92618428	H1-hESC	embryonic stem cell:	n/a	chr10:92617442-92617455 chr10:92617619-92617630
6	RCOR1	chr10:92617385-92618088	K562	blood:	n/a	n/a
7	E2F4	chr10:92617636-92618103	MCF10A-Er-Src	breast:	n/a	chr10:92617951-92617960 chr10:92617767-92617777
8	CEBPB	chr10:92617942-92618348	ECC-1	luminal epithelium:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
9	CEBPB	chr10:92618021-92618329	K562	blood:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
10	CTCF	chr10:92617920-92618070	HMEC	breast:	n/a	n/a
11	TCF7L2	chr10:92616689-92618109	HCT-116	colon:	n/a	n/a
12	RAD21	chr10:92617193-92618133	H1-hESC	embryonic stem cell:	n/a	chr10:92617707-92617720
13	CTBP2	chr10:92616709-92618174	H1-hESC	embryonic stem cell:	n/a	n/a
14	CTCF	chr10:92617204-92618328	A549	lung:	n/a	chr10:92617551-92617564 chr10:92617645-92617658 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
15	EGR1	chr10:92617857-92618096	K562	blood:	n/a	chr10:92617968-92617978 chr10:92617964-92617979 chr10:92617965-92617978 chr10:92617965-92617978
16	POLR2A	chr10:92617813-92618150	HCT-116	colon:	n/a	n/a
17	CCNT2	chr10:92617232-92618061	K562	blood:	n/a	chr10:92617798-92617807
18	E2F6	chr10:92616950-92618074	K562	blood:	n/a	chr10:92617515-92617524 chr10:92617951-92617960 chr10:92617767-92617777 chr10:92617558-92617568
19	MAX	chr10:92617840-92618099	K562	blood:	n/a	n/a
20	JUND	chr10:92617977-92618116	H1-hESC	embryonic stem cell:	n/a	n/a
21	HA-E2F1	chr10:92617853-92618376	MCF-7	breast:	n/a	chr10:92617951-92617960
22	CEBPB	chr10:92617873-92618405	A549	lung:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
23	CEBPB	chr10:92617968-92618348	H1-hESC	embryonic stem cell:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
24	CEBPB	chr10:92617975-92618349	MCF-7	breast:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
25	CEBPB	chr10:92617998-92618357	A549	lung:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
26	CEBPB	chr10:92618002-92618341	MCF-7	breast:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
27	UBTF	chr10:92617322-92618071	K562	blood:	n/a	n/a
28	ZBTB7A	chr10:92617871-92618099	K562	blood:	n/a	n/a
29	EP300	chr10:92617466-92618260	ECC-1	luminal epithelium:	n/a	chr10:92617742-92617758 chr10:92617970-92617979
30	MAX	chr10:92617162-92618190	A549	lung:	n/a	chr10:92617598-92617608
31	CTCF	chr10:92617980-92618130	HPF	lung:	n/a	n/a
32	CEBPB	chr10:92618057-92618317	HepG2	liver:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
33	SP1	chr10:92617856-92618255	H1-hESC	embryonic stem cell:	n/a	chr10:92617969-92617981 chr10:92617969-92617981
34	MYC	chr10:92617848-92618164	MCF10A-Er-Src	breast:	n/a	n/a
35	CEBPB	chr10:92617987-92618319	A549	lung:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
36	POLR2A	chr10:92618052-92618484	H1-neurons	neurons:	n/a	n/a
37	POLR2A	chr10:92617387-92618605	MCF10A-Er-Src	breast:	n/a	n/a
38	TBP	chr10:92617999-92618139	H1-hESC	embryonic stem cell:	n/a	n/a
39	ZBTB7A	chr10:92617395-92618337	ECC-1	luminal epithelium:	n/a	n/a
40	CEBPB	chr10:92617982-92618322	Hela-S3	cervix:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
41	POLR2A	chr10:92617432-92618184	MCF10A-Er-Src	breast:	n/a	n/a
42	CEBPB	chr10:92618031-92618378	ECC-1	luminal epithelium:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
43	FOS	chr10:92618055-92618236	MCF10A-Er-Src	breast:	n/a	n/a
44	CEBPB	chr10:92617970-92618334	IMR90	lung:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:92618033-92618083	A549	lung:	n/a
2	chr10:92618033-92618083	PANC-1	pancreas:	n/a
3	chr10:92618033-92618083	MCF-7	breast:	n/a
4	chr10:92618033-92618083	Hela-S3	cervix:	n/a
5	chr10:92618033-92618083	GM12892	blood:	n/a
6	chr10:92618033-92618083	BE2_C	brain:	n/a
7	chr10:92618033-92618083	ProgFib	skin:	n/a
8	chr10:92618033-92618083	HEK293	kidney:	embryo
9	chr10:92618033-92618083	U87	brain:	n/a
10	chr10:92618033-92618083	LNCaP	prostate:	n/a
11	chr10:92618033-92618083	SKMC	muscle:	n/a
12	chr10:92618033-92618083	Hepatocyte	liver:	n/a
13	chr10:92618033-92618083	HRCEpiC	kidney:	n/a
14	chr10:92618033-92618083	GM06990	blood:	n/a
15	chr10:92618033-92618083	SK-N-SH	brain:	n/a
16	chr10:92618033-92618083	HEEpiC	esophagus:	n/a
17	chr10:92618033-92618083	ECC-1	luminal epithelium:	n/a
18	chr10:92618033-92618083	Jurkat	blood:	n/a
19	chr10:92618033-92618083	AoSMC	blood vessel:	n/a
20	chr10:92618033-92618083	GM19239	blood:	n/a
21	chr10:92618033-92618083	NHDF-neo	bronchial:	n/a
22	chr10:92618033-92618083	HIPEpiC	eye:	n/a
23	chr10:92618033-92618083	AG04449	skin:	fetal
24	chr10:92618033-92618083	AG04450	lung:	fetal
25	chr10:92618033-92618083	HRPEpiC	eye:	n/a
26	chr10:92618033-92618083	NHBE	bronchial:	n/a
27	chr10:92618033-92618083	HCF	heart:	n/a
28	chr10:92618033-92618083	T-47D	breast:	n/a
29	chr10:92618033-92618083	BJ	skin:	n/a
30	chr10:92618033-92618083	HCM	heart:	n/a
31	chr10:92618033-92618083	Caco-2	colon:	n/a
32	chr10:92618033-92618083	NT2-D1	testis:	n/a
33	chr10:92618033-92618083	K562	blood:	n/a
34	chr10:92618033-92618083	PrEC	prostate:	n/a
35	chr10:92618033-92618083	HNPCEpiC	eye:	n/a
36	chr10:92618033-92618083	HPAEpiC	pulmonary alveolar:	n/a
37	chr10:92618033-92618083	MCF10A-Er-Src	breast:	n/a
38	chr10:92618033-92618083	AG10803	skin:	n/a
39	chr10:92618033-92618083	NB4	blood:	n/a
40	chr10:92618033-92618083	AG09319	gingival:	n/a
41	chr10:92618033-92618083	GM12878	blood:	n/a
42	chr10:92618033-92618083	IMR90	lung:	fetal
43	chr10:92618033-92618083	AG09309	skin:	n/a
44	chr10:92618033-92618083	HCT-116	colon:	n/a
45	chr10:92618033-92618083	HepG2	liver:	n/a
46	chr10:92618033-92618083	HRE	kidney:	n/a
47	chr10:92618033-92618083	ovcar-3	ovarian:	n/a
48	chr10:92618033-92618083	H1-hESC	embryonic stem cell:	embryo
49	chr10:92618033-92618083	HCPEpiC	choroid plexus:	n/a
50	chr10:92618033-92618083	HAEpiC	amniotic membrane:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92617446..92619942-chr10:92629114..92632072,2	K562	blood:

Variant related genes	Relation type
HTR7	TF binding region
HTR7	CpG island
ENSG00000148688	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv20899	chr10:92617266-92618168	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	nsv551911	chr10:92617295-92618082	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
4	esv1815232	chr10:92617295-92618616	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1823335	chr10:92617295-92618616	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1840527	chr10:92617295-92618616	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv551912	chr10:92617465-92618082	Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92614400-92618600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:92614400-92618800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr10:92614400-92619000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:92614800-92618600	Bivalent/Poised TSS	Fetal Brain Female	brain
5	chr10:92614800-92619200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr10:92615000-92618200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr10:92615200-92618200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:92615400-92618600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:92615800-92618400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr10:92616000-92618600	Bivalent/Poised TSS	Fetal Stomach	stomach
11	chr10:92616200-92618400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:92616600-92618400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:92616600-92618600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
14	chr10:92616800-92618400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr10:92616800-92618400	Active TSS	Aorta	Aorta
16	chr10:92616800-92618800	Active TSS	NHLF	lung
17	chr10:92617000-92618200	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:92617000-92618200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
19	chr10:92617000-92618200	Flanking Bivalent TSS/Enh	Dnd41	blood
20	chr10:92617000-92618200	Active TSS	Hela-S3	cervix
21	chr10:92617000-92618200	Bivalent/Poised TSS	HepG2	liver
22	chr10:92617000-92618400	Active TSS	Brain Cingulate Gyrus	brain
23	chr10:92617000-92618400	Active TSS	Psoas Muscle	Psoas
24	chr10:92617000-92618400	Active TSS	HSMMtube	muscle
25	chr10:92617000-92618600	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr10:92617000-92618600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:92617200-92618200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:92617200-92618200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:92617200-92618200	Active TSS	Primary monocytes fromperipheralblood	blood
30	chr10:92617200-92618200	Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr10:92617200-92618200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr10:92617200-92618200	Active TSS	Colon Smooth Muscle	Colon
33	chr10:92617200-92618200	Active TSS	Esophagus	oesophagus
34	chr10:92617200-92618200	Active TSS	Gastric	stomach
35	chr10:92617200-92618200	Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr10:92617200-92618200	Active TSS	NH-A	brain
37	chr10:92617200-92618200	Active TSS	NHDF-Ad	bronchial
38	chr10:92617200-92618400	Active TSS	H9 Cell Line	embryonic stem cell
39	chr10:92617200-92618400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:92617200-92618400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:92617200-92618400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:92617200-92618400	Active TSS	Brain Angular Gyrus	brain
43	chr10:92617200-92618400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
44	chr10:92617200-92618400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
45	chr10:92617200-92618400	Active TSS	K562	blood
46	chr10:92617200-92618600	Active TSS	Brain Anterior Caudate	brain
47	chr10:92617200-92618600	Active TSS	Brain Substantia Nigra	brain
48	chr10:92617200-92618600	Active TSS	Rectal Smooth Muscle	rectum
49	chr10:92617400-92618200	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr10:92617400-92618200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

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