Variant report
| Variant | esv2181761 |
|---|---|
| Chromosome Location | chr10:25035024-25035455 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs549045383 | chr10:25035062-25035063 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs548500568 | chr10:25035066-25035067 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs568598812 | chr10:25035067-25035068 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs187606266 | chr10:25035112-25035113 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs191432933 | chr10:25035135-25035136 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs11014220 | chr10:25035147-25035148 | Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 7 | rs11014221 | chr10:25035152-25035153 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs539078282 | chr10:25035167-25035168 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs373924984 | chr10:25035192-25035193 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs112328475 | chr10:25035255-25035256 | Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs374371321 | chr10:25035282-25035283 | Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs371831867 | chr10:25035309-25035310 | Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs7916054 | chr10:25035311-25035312 | Active TSS Flanking Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 14 | rs183746743 | chr10:25035392-25035393 | Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs576061671 | chr10:25035416-25035417 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs541871867 | chr10:25035422-25035423 | Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs11014222 | chr10:25035440-25035441 | Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Variant related diseases (count:42)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Behavioral abnormalities | 21522184 | CNVD |
| Dysmorphic features | 21522184 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Autism | 21439084 | CNVD |
| Maculopathy | 20981449 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Ovarian cancer | 21781307 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Breast cancer | 22522925 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25034600-25035200 | Active TSS | Placenta | Placenta |
| 2 | chr10:25035000-25035200 | Active TSS | HepG2 | liver |
| 3 | chr10:25035000-25035600 | Active TSS | A549 | lung |
| 4 | chr10:25035200-25035400 | Flanking Active TSS | HepG2 | liver |
