Variant report

Variant	rs7916054
Chromosome Location	chr10:25035311-25035312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10466055	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10764492	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11014220	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014222	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1414456	0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1414457	0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1414458	0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1414459	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2152432	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4072915	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4570483	0.86[EUR][1000 genomes]
rs4747494	0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4748970	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4748977	0.88[EUR][1000 genomes]
rs4748978	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6482420	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6482421	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6482422	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6482424	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6482430	0.81[AMR][1000 genomes]
rs6482440	0.87[EUR][1000 genomes]
rs7067766	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7071605	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7071609	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7083008	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7900706	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7903650	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7907931	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7912395	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7919485	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7922575	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2181761	chr10:25035024-25035455	Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
2	esv3480840	chr10:25035054-25035324	Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv3399462	chr10:25035082-25035380	Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3424745	chr10:25035084-25035405	Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3455	chr10:25035139-25035357	Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25035000-25035600	Active TSS	A549	lung
2	chr10:25035200-25035400	Flanking Active TSS	HepG2	liver

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