Variant report

Variant	rs2152432
Chromosome Location	chr10:25048987-25048988
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10466055	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10764492	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11014220	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11014222	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1414456	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414457	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414458	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414459	0.92[CEU][hapmap];0.87[GIH][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs4072915	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4570483	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4747494	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4748970	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4748977	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4748978	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6482420	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6482421	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6482422	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6482424	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6482428	0.84[CEU][hapmap]
rs6482439	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6482440	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6482443	0.83[EUR][1000 genomes]
rs7067766	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7071605	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7071609	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7083008	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7900706	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7907931	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7911992	0.81[EUR][1000 genomes]
rs7912395	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7916054	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7919485	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7922575	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs951857	0.81[EUR][1000 genomes]
rs951859	0.83[EUR][1000 genomes]
rs952917	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2152432	NEBL	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25045600-25051000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:25045600-25051200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:25045600-25051600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:25048000-25049200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:25048000-25049400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:25048200-25049000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:25048200-25049800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:25048600-25049400	Enhancers	Brain Hippocampus Middle	brain

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