Variant report

Variant	rs10466055
Chromosome Location	chr10:25040622-25040623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25039089..25041959-chr10:25043831..25045636,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10764492	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11014220	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11014222	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1414456	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1414457	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1414458	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1414459	0.93[ASW][hapmap];0.92[CEU][hapmap];0.87[GIH][hapmap];0.90[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2152432	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4072915	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4570483	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4747494	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4748970	1.00[CEU][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4748977	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4748978	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6482420	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6482421	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6482422	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6482424	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6482428	0.84[CEU][hapmap]
rs6482430	0.81[AMR][1000 genomes]
rs6482439	0.80[AMR][1000 genomes]
rs6482440	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7067766	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7071605	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7071609	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7083008	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7900706	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7907931	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7912395	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7916054	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7919485	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7922575	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs952917	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10466055	NEBL	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25040400-25041000	Enhancers	Hela-S3	cervix

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