Variant report

Variant	rs1414459
Chromosome Location	chr10:25028792-25028793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25024396..25026690-chr10:25027032..25029795,2	MCF-7	breast:
2	chr10:25011164..25015788-chr10:25024890..25029742,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107863	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10466055	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10764492	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11014180	1.00[JPT][hapmap]
rs11014220	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11014222	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12257709	1.00[JPT][hapmap]
rs1414456	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1414457	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1414458	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16925135	1.00[JPT][hapmap]
rs16925138	1.00[JPT][hapmap]
rs2152432	0.86[EUR][1000 genomes]
rs4570483	0.86[EUR][1000 genomes]
rs4747494	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4748969	0.80[CEU][hapmap]
rs4748970	0.91[CEU][hapmap];0.91[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4748977	0.89[EUR][1000 genomes]
rs4748978	0.85[EUR][1000 genomes]
rs6482420	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6482421	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6482422	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6482424	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6482428	0.92[CEU][hapmap]
rs6482440	0.87[EUR][1000 genomes]
rs7067766	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7071605	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7071609	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7083008	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7900706	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7907931	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7911992	0.80[EUR][1000 genomes]
rs7912395	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7916054	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7919485	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7922575	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1414459	NEBL	cis	parietal	SCAN
rs1414459	C10orf67	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25021800-25029800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links