The 2.0 version of rSNPBase

Variant report

Variant rs16925135
Chromosome Location chr10:25180275-25180276
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:25168200-25188200 Weak transcription Brain Hippocampus Middle brain
2 chr10:25168200-25189000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr10:25171000-25182200 Weak transcription Fetal Intestine Small intestine
4 chr10:25171400-25182200 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr10:25171400-25182600 Weak transcription K562 blood
6 chr10:25171400-25183200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
7 chr10:25172600-25183600 Weak transcription Brain Inferior Temporal Lobe brain
8 chr10:25174000-25186200 Weak transcription ES-I3 Cell Line embryonic stem cell
9 chr10:25175800-25189800 Weak transcription Stomach Mucosa stomach
10 chr10:25175800-25190000 Weak transcription Fetal Lung lung
11 chr10:25176000-25183400 Weak transcription Pancreas Pancrea
12 chr10:25176400-25183200 Weak transcription Fetal Stomach stomach
13 chr10:25176800-25183200 Weak transcription Thymus Thymus
14 chr10:25177200-25182600 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr10:25177400-25182800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr10:25177400-25185600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr10:25177400-25200400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr10:25177600-25182800 Weak transcription Primary B cells from peripheral blood blood
19 chr10:25177600-25183000 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr10:25177800-25183200 Weak transcription Primary T cells from cord blood blood
21 chr10:25178000-25181800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr10:25178200-25181400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr10:25178200-25181400 Enhancers NHEK skin
24 chr10:25178200-25181600 Enhancers HMEC breast
25 chr10:25178200-25181800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr10:25178200-25182600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
27 chr10:25178400-25181400 Enhancers NHDF-Ad bronchial
28 chr10:25178400-25181600 Enhancers A549 lung
29 chr10:25178400-25181800 Enhancers Muscle Satellite Cultured Cells --
30 chr10:25178400-25182600 Weak transcription Primary T helper cells fromperipheralblood blood
31 chr10:25178400-25182800 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr10:25178400-25183200 Weak transcription Primary T killer naive cells fromperipheralblood blood
33 chr10:25178400-25184000 Enhancers Hela-S3 cervix
34 chr10:25178600-25181400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
35 chr10:25178600-25182000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
36 chr10:25178800-25181000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
37 chr10:25179000-25180800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr10:25179000-25182600 Weak transcription Primary T helper cells PMA-I stimulated --
39 chr10:25179000-25182800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
40 chr10:25179000-25183200 Weak transcription Primary T killer memory cells from peripheral blood blood
41 chr10:25179400-25180600 Weak transcription HUVEC blood vessel
42 chr10:25179400-25182000 Weak transcription Brain Substantia Nigra brain
43 chr10:25179400-25182200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
44 chr10:25179400-25182800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr10:25179400-25182800 Weak transcription Lung lung
46 chr10:25179400-25190400 Weak transcription Fetal Muscle Trunk muscle
47 chr10:25179600-25180600 Weak transcription Osteobl bone
48 chr10:25179600-25182800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr10:25179600-25183200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr10:25179600-25186200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015