Variant report

Variant	rs7905478
Chromosome Location	chr10:25249492-25249493
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25146602..25148894-chr10:25247963..25249557,2	K562	blood:
2	chr10:25245793..25250014-chr10:25304011..25307329,4	MCF-7	breast:
3	chr10:25241943..25244006-chr10:25248893..25251867,4	MCF-7	breast:
4	chr10:25247885..25251535-chr10:25304121..25307402,5	K562	blood:
5	chr10:25249069..25251777-chr10:25273564..25275756,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000273107	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs11014282	0.83[ASN][1000 genomes]
rs1124490	1.00[EUR][1000 genomes]
rs12241288	1.00[EUR][1000 genomes]
rs12248877	0.86[EUR][1000 genomes]
rs12255703	1.00[ASN][1000 genomes]
rs12256206	1.00[ASN][1000 genomes]
rs12257709	0.83[ASN][1000 genomes]
rs12261100	0.93[EUR][1000 genomes]
rs1388926	0.93[EUR][1000 genomes]
rs1409305	1.00[EUR][1000 genomes]
rs1409306	1.00[ASN][1000 genomes]
rs1552772	1.00[EUR][1000 genomes]
rs16925135	0.83[ASN][1000 genomes]
rs16925138	0.83[ASN][1000 genomes]
rs16925145	1.00[ASN][1000 genomes]
rs16925193	1.00[EUR][1000 genomes]
rs16925198	1.00[EUR][1000 genomes]
rs2220708	0.83[ASN][1000 genomes]
rs3808907	0.87[EUR][1000 genomes]
rs41279882	1.00[EUR][1000 genomes]
rs41279886	1.00[EUR][1000 genomes]
rs41279890	1.00[EUR][1000 genomes]
rs41279894	1.00[EUR][1000 genomes]
rs41304607	0.93[EUR][1000 genomes]
rs41307498	0.93[EUR][1000 genomes]
rs4504964	1.00[ASN][1000 genomes]
rs55788231	0.93[EUR][1000 genomes]
rs57639701	1.00[EUR][1000 genomes]
rs57642444	1.00[EUR][1000 genomes]
rs57654443	1.00[ASN][1000 genomes]
rs57681668	0.83[ASN][1000 genomes]
rs57695610	1.00[EUR][1000 genomes]
rs58164169	0.87[EUR][1000 genomes]
rs58320082	1.00[EUR][1000 genomes]
rs59189661	1.00[EUR][1000 genomes]
rs59876862	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60880723	1.00[EUR][1000 genomes]
rs61278248	1.00[EUR][1000 genomes]
rs61585865	1.00[EUR][1000 genomes]
rs61854283	0.83[ASN][1000 genomes]
rs6482453	1.00[ASN][1000 genomes]
rs6482454	1.00[ASN][1000 genomes]
rs6482455	1.00[ASN][1000 genomes]
rs6482464	1.00[EUR][1000 genomes]
rs6482465	0.83[ASN][1000 genomes]
rs7072126	1.00[ASN][1000 genomes]
rs7072278	0.80[EUR][1000 genomes]
rs7073171	0.93[EUR][1000 genomes]
rs7075327	1.00[EUR][1000 genomes]
rs7075926	1.00[ASN][1000 genomes]
rs7078660	1.00[ASN][1000 genomes]
rs7080371	0.93[EUR][1000 genomes]
rs7080496	0.83[ASN][1000 genomes]
rs7083691	0.93[EUR][1000 genomes]
rs7084900	1.00[ASN][1000 genomes]
rs7099168	1.00[EUR][1000 genomes]
rs7100005	1.00[ASN][1000 genomes]
rs73606586	1.00[ASN][1000 genomes]
rs73606590	1.00[ASN][1000 genomes]
rs73606594	0.93[EUR][1000 genomes]
rs73606599	1.00[EUR][1000 genomes]
rs73606600	1.00[EUR][1000 genomes]
rs73606602	1.00[ASN][1000 genomes]
rs73608203	1.00[EUR][1000 genomes]
rs73608204	1.00[EUR][1000 genomes]
rs73608205	1.00[ASN][1000 genomes]
rs73608206	1.00[EUR][1000 genomes]
rs73608208	1.00[EUR][1000 genomes]
rs73608210	0.93[EUR][1000 genomes]
rs73608211	1.00[EUR][1000 genomes]
rs73608212	1.00[EUR][1000 genomes]
rs73608213	1.00[EUR][1000 genomes]
rs73608214	0.93[EUR][1000 genomes]
rs73608216	0.93[EUR][1000 genomes]
rs73608217	0.93[EUR][1000 genomes]
rs73608218	0.93[EUR][1000 genomes]
rs73608219	0.93[EUR][1000 genomes]
rs73608223	1.00[EUR][1000 genomes]
rs73608224	1.00[EUR][1000 genomes]
rs73608225	1.00[EUR][1000 genomes]
rs73608226	0.87[EUR][1000 genomes]
rs73608229	1.00[EUR][1000 genomes]
rs73608233	1.00[EUR][1000 genomes]
rs73608234	1.00[EUR][1000 genomes]
rs73608235	1.00[EUR][1000 genomes]
rs73608236	1.00[EUR][1000 genomes]
rs73608237	1.00[EUR][1000 genomes]
rs73608238	1.00[EUR][1000 genomes]
rs73608239	1.00[EUR][1000 genomes]
rs73608240	1.00[EUR][1000 genomes]
rs73608241	1.00[EUR][1000 genomes]
rs7910241	1.00[ASN][1000 genomes]
rs7918015	1.00[ASN][1000 genomes]
rs7920527	0.93[EUR][1000 genomes]
rs9663998	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25242400-25251400	Weak transcription	Liver	Liver
2	chr10:25242400-25252800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:25242800-25251400	Weak transcription	Fetal Intestine Large	intestine
4	chr10:25242800-25251600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:25243000-25251400	Weak transcription	Fetal Intestine Small	intestine
6	chr10:25247400-25249800	Enhancers	Fetal Muscle Leg	muscle
7	chr10:25247800-25251600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:25248200-25250800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr10:25248200-25250800	Weak transcription	Stomach Mucosa	stomach
10	chr10:25248200-25251600	Weak transcription	NHEK	skin
11	chr10:25248200-25253800	Weak transcription	Right Atrium	heart
12	chr10:25248400-25249600	Enhancers	Fetal Lung	lung
13	chr10:25248400-25250000	Enhancers	Colon Smooth Muscle	Colon
14	chr10:25248400-25250600	Weak transcription	HMEC	breast
15	chr10:25248400-25251600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:25248400-25251600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:25248400-25256600	Weak transcription	Fetal Brain Male	brain
18	chr10:25248400-25256600	Weak transcription	Fetal Kidney	kidney
19	chr10:25248600-25250600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:25248600-25251600	Weak transcription	A549	lung
21	chr10:25248600-25251600	Weak transcription	Hela-S3	cervix
22	chr10:25248600-25251600	Weak transcription	NH-A	brain
23	chr10:25248600-25251800	Weak transcription	K562	blood
24	chr10:25249200-25251000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:25249200-25252600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:25249200-25252800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:25249200-25258600	Weak transcription	Brain Anterior Caudate	brain
28	chr10:25249200-25258600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:25249200-25262200	Weak transcription	Fetal Stomach	stomach
30	chr10:25249200-25263800	Weak transcription	Ovary	ovary
31	chr10:25249400-25251800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:25249400-25258200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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