Variant report

Variant	rs73608236
Chromosome Location	chr10:25352625-25352626
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:25349510..25351855-chr10:25352161..25354821,2	MCF-7	breast:
2	chr10:25344528..25346562-chr10:25350767..25353027,3	K562	blood:
3	chr10:25303827..25307133-chr10:25349437..25354097,8	K562	blood:
4	chr10:25334592..25336921-chr10:25350299..25353033,2	K562	blood:
5	chr10:25303827..25307969-chr10:25351029..25354599,5	K562	blood:
6	chr10:25344134..25348116-chr10:25349607..25352644,3	MCF-7	breast:
7	chr10:25304955..25307281-chr10:25348708..25354586,7	MCF-7	breast:
8	chr10:25306123..25307821-chr10:25350955..25353147,2	MCF-7	breast:
9	chr10:25345062..25348953-chr10:25349936..25353027,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1124490	1.00[EUR][1000 genomes]
rs12241288	1.00[EUR][1000 genomes]
rs12248877	0.86[EUR][1000 genomes]
rs12261100	0.93[EUR][1000 genomes]
rs1388926	0.93[EUR][1000 genomes]
rs1409305	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1552772	1.00[EUR][1000 genomes]
rs16925193	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925198	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3808907	0.87[EUR][1000 genomes]
rs41279882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41304607	0.93[EUR][1000 genomes]
rs41307498	0.93[EUR][1000 genomes]
rs55788231	0.93[EUR][1000 genomes]
rs57639701	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57642444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57695610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58164169	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58320082	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59189661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59876862	0.93[EUR][1000 genomes]
rs60880723	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61278248	1.00[EUR][1000 genomes]
rs61585865	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482464	1.00[EUR][1000 genomes]
rs7072278	0.80[EUR][1000 genomes]
rs7073171	0.93[EUR][1000 genomes]
rs7075327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080371	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7083691	0.93[EUR][1000 genomes]
rs7099168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73606594	0.93[EUR][1000 genomes]
rs73606599	1.00[EUR][1000 genomes]
rs73606600	1.00[EUR][1000 genomes]
rs73608203	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608204	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608210	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608211	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608214	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608216	0.93[EUR][1000 genomes]
rs73608217	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608218	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608219	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608226	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608234	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608237	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608238	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608239	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608240	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608241	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7905478	1.00[EUR][1000 genomes]
rs7920527	0.93[EUR][1000 genomes]
rs9663998	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25348400-25352800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:25351600-25353000	Weak transcription	NHEK	skin
3	chr10:25351600-25353400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:25351600-25353600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:25351600-25354000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:25351600-25357000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:25351600-25357200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:25351800-25353000	Enhancers	K562	blood
9	chr10:25351800-25356800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:25351800-25356800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:25351800-25356800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:25351800-25356800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:25351800-25356800	Weak transcription	HUVEC	blood vessel
14	chr10:25351800-25356800	Weak transcription	NH-A	brain
15	chr10:25351800-25356800	Weak transcription	Osteobl	bone
16	chr10:25352200-25356800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:25352400-25353600	Enhancers	HMEC	breast
18	chr10:25352400-25354200	Weak transcription	HepG2	liver
19	chr10:25352400-25356800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:25352600-25352800	Enhancers	Lung	lung

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