Variant report

Variant	rs73608238
Chromosome Location	chr10:25354124-25354125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25349510..25351855-chr10:25352161..25354821,2	MCF-7	breast:
2	chr10:25303827..25307969-chr10:25351029..25354599,5	K562	blood:
3	chr10:25304955..25307281-chr10:25348708..25354586,7	MCF-7	breast:
4	chr10:25352997..25355657-chr10:25355970..25357954,2	K562	blood:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1124490	1.00[EUR][1000 genomes]
rs12241288	1.00[EUR][1000 genomes]
rs12248877	0.86[EUR][1000 genomes]
rs12261100	0.93[EUR][1000 genomes]
rs1388926	0.93[EUR][1000 genomes]
rs1409305	1.00[EUR][1000 genomes]
rs1552772	1.00[EUR][1000 genomes]
rs16925193	1.00[EUR][1000 genomes]
rs16925198	1.00[EUR][1000 genomes]
rs3808907	0.87[EUR][1000 genomes]
rs41279882	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279886	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279890	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279894	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41304607	0.93[EUR][1000 genomes]
rs41307498	0.93[EUR][1000 genomes]
rs55788231	0.93[EUR][1000 genomes]
rs57639701	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57642444	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57695610	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58164169	0.87[EUR][1000 genomes]
rs58320082	1.00[EUR][1000 genomes]
rs59189661	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59876862	0.93[EUR][1000 genomes]
rs60880723	1.00[EUR][1000 genomes]
rs61278248	1.00[EUR][1000 genomes]
rs61585865	1.00[EUR][1000 genomes]
rs6482464	1.00[EUR][1000 genomes]
rs7072278	0.80[EUR][1000 genomes]
rs7073171	0.93[EUR][1000 genomes]
rs7075327	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080371	0.93[EUR][1000 genomes]
rs7083691	0.93[EUR][1000 genomes]
rs7099168	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73606594	0.93[EUR][1000 genomes]
rs73606599	1.00[EUR][1000 genomes]
rs73606600	1.00[EUR][1000 genomes]
rs73608203	1.00[EUR][1000 genomes]
rs73608204	1.00[EUR][1000 genomes]
rs73608206	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608208	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608210	0.93[EUR][1000 genomes]
rs73608211	1.00[EUR][1000 genomes]
rs73608212	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608213	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608214	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608216	0.93[EUR][1000 genomes]
rs73608217	0.93[EUR][1000 genomes]
rs73608218	0.93[EUR][1000 genomes]
rs73608219	0.93[EUR][1000 genomes]
rs73608223	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608224	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608225	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608226	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608229	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608233	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608234	1.00[EUR][1000 genomes]
rs73608235	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608236	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7905478	1.00[EUR][1000 genomes]
rs7920527	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9663998	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25351600-25357000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:25351600-25357200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:25351800-25356800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:25351800-25356800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:25351800-25356800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:25351800-25356800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:25351800-25356800	Weak transcription	HUVEC	blood vessel
8	chr10:25351800-25356800	Weak transcription	NH-A	brain
9	chr10:25351800-25356800	Weak transcription	Osteobl	bone
10	chr10:25352200-25356800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:25352400-25354200	Weak transcription	HepG2	liver
12	chr10:25352400-25356800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:25352800-25354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:25353600-25355000	Weak transcription	K562	blood
15	chr10:25353600-25356600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:25353600-25356600	Weak transcription	HMEC	breast
17	chr10:25353600-25356800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:25353800-25356600	Weak transcription	NHEK	skin

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