Variant report

Variant	rs7080371
Chromosome Location	chr10:25287916-25287917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25287153..25289677-chr10:25305591..25307248,2	K562	blood:
2	chr10:25287037..25288924-chr10:25305037..25307125,2	K562	blood:

Variant related genes	Relation type
ENSG00000151023	Chromatin interaction
ENSG00000185875	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1124490	0.93[EUR][1000 genomes]
rs12241288	0.93[EUR][1000 genomes]
rs12248877	0.93[EUR][1000 genomes]
rs12261100	0.87[EUR][1000 genomes]
rs1388926	0.87[EUR][1000 genomes]
rs1409305	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1552772	0.93[EUR][1000 genomes]
rs16925193	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16925198	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3808907	0.94[EUR][1000 genomes]
rs41279882	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41279886	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41279890	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41279894	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41304607	0.86[EUR][1000 genomes]
rs41307498	0.86[EUR][1000 genomes]
rs55788231	0.86[EUR][1000 genomes]
rs57639701	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57642444	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57695610	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58164169	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58320082	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59189661	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59876862	1.00[EUR][1000 genomes]
rs60880723	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61278248	0.93[EUR][1000 genomes]
rs61585865	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6482464	0.93[EUR][1000 genomes]
rs7072278	0.87[EUR][1000 genomes]
rs7073171	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7075327	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7083691	0.87[EUR][1000 genomes]
rs7099168	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73606594	0.86[EUR][1000 genomes]
rs73606599	0.93[EUR][1000 genomes]
rs73606600	0.93[EUR][1000 genomes]
rs73608203	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608204	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608206	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608208	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608210	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608211	0.93[EUR][1000 genomes]
rs73608212	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608213	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608214	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608216	1.00[EUR][1000 genomes]
rs73608217	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608218	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608219	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608223	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608224	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608225	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608226	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73608229	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608233	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608234	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608235	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608236	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608237	0.93[EUR][1000 genomes]
rs73608238	0.93[EUR][1000 genomes]
rs73608239	0.93[EUR][1000 genomes]
rs73608240	0.93[EUR][1000 genomes]
rs73608241	0.93[EUR][1000 genomes]
rs7905478	0.93[EUR][1000 genomes]
rs7920527	0.87[EUR][1000 genomes]
rs9663998	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25264600-25292200	Weak transcription	Ovary	ovary
2	chr10:25286800-25288200	Strong transcription	Cortex derived primary cultured neurospheres	brain

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