Variant report

Variant	rs73608235
Chromosome Location	chr10:25350846-25350847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:25350138..25352241-chr10:25355108..25357944,2	MCF-7	breast:
2	chr10:25344528..25346562-chr10:25350767..25353027,3	K562	blood:
3	chr10:25343578..25346366-chr10:25349000..25351556,3	MCF-7	breast:
4	chr10:25303827..25307133-chr10:25349437..25354097,8	K562	blood:
5	chr10:25334592..25336921-chr10:25350299..25353033,2	K562	blood:
6	chr10:25349510..25351855-chr10:25352161..25354821,2	MCF-7	breast:
7	chr10:25307575..25310244-chr10:25349571..25352250,2	MCF-7	breast:
8	chr10:25340489..25343849-chr10:25349173..25351054,3	K562	blood:
9	chr10:25344134..25348116-chr10:25349607..25352644,3	MCF-7	breast:
10	chr10:25304955..25307281-chr10:25348708..25354586,7	MCF-7	breast:
11	chr10:25239858..25243208-chr10:25347592..25352504,4	K562	blood:
12	chr10:25350226..25351753-chr10:25385209..25386887,2	K562	blood:
13	chr10:25239858..25242854-chr10:25350195..25352504,2	K562	blood:
14	chr10:25345062..25348953-chr10:25349936..25353027,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000099256	Chromatin interaction
ENSG00000273107	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1124490	1.00[EUR][1000 genomes]
rs12241288	1.00[EUR][1000 genomes]
rs12248877	0.86[EUR][1000 genomes]
rs12261100	0.93[EUR][1000 genomes]
rs1388926	0.93[EUR][1000 genomes]
rs1409305	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1552772	1.00[EUR][1000 genomes]
rs16925193	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925198	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3808907	0.87[EUR][1000 genomes]
rs41279882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41304607	0.93[EUR][1000 genomes]
rs41307498	0.93[EUR][1000 genomes]
rs55788231	0.93[EUR][1000 genomes]
rs57639701	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57642444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57695610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58164169	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58320082	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59189661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59876862	0.93[EUR][1000 genomes]
rs60880723	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61278248	1.00[EUR][1000 genomes]
rs61585865	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482464	1.00[EUR][1000 genomes]
rs7072278	0.80[EUR][1000 genomes]
rs7073171	0.93[EUR][1000 genomes]
rs7075327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080371	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7083691	0.93[EUR][1000 genomes]
rs7099168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73606594	0.93[EUR][1000 genomes]
rs73606599	1.00[EUR][1000 genomes]
rs73606600	1.00[EUR][1000 genomes]
rs73608203	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608204	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608210	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608211	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608214	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608216	0.93[EUR][1000 genomes]
rs73608217	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608218	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608219	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608226	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608234	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608237	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608238	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608239	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608240	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608241	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7905478	1.00[EUR][1000 genomes]
rs7920527	0.93[EUR][1000 genomes]
rs9663998	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25348200-25351200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:25348200-25351600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr10:25348200-25352200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:25348400-25351000	Enhancers	HMEC	breast
5	chr10:25348400-25351200	Enhancers	HUVEC	blood vessel
6	chr10:25348400-25351600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:25348400-25352200	Enhancers	Stomach Mucosa	stomach
8	chr10:25348400-25352800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:25348600-25351000	Enhancers	Osteobl	bone
10	chr10:25348800-25352000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:25349000-25351200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:25349200-25351200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:25349200-25351400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:25349200-25351400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:25349400-25351000	Enhancers	NHEK	skin
16	chr10:25349400-25351200	Weak transcription	NHDF-Ad	bronchial
17	chr10:25349600-25351000	Enhancers	Aorta	Aorta
18	chr10:25349600-25351000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:25349800-25351200	Weak transcription	Placenta	Placenta
20	chr10:25350000-25351000	Weak transcription	Colonic Mucosa	Colon
21	chr10:25350400-25351600	Flanking Active TSS	Fetal Intestine Small	intestine
22	chr10:25350400-25351800	Flanking Active TSS	K562	blood
23	chr10:25350600-25351000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:25350600-25351000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:25350600-25351200	Flanking Active TSS	Fetal Intestine Large	intestine
26	chr10:25350600-25351200	Enhancers	HSMM	muscle
27	chr10:25350600-25351400	Flanking Active TSS	Duodenum Mucosa	Duodenum
28	chr10:25350600-25351400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
29	chr10:25350600-25351800	Enhancers	Pancreas	Pancrea
30	chr10:25350600-25351800	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr10:25350600-25351800	Flanking Active TSS	A549	lung
32	chr10:25350600-25351800	Flanking Active TSS	Hela-S3	cervix
33	chr10:25350600-25352000	Enhancers	Lung	lung
34	chr10:25350800-25351000	Enhancers	Brain Hippocampus Middle	brain
35	chr10:25350800-25351200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:25350800-25351200	Flanking Active TSS	Liver	Liver
37	chr10:25350800-25351200	Weak transcription	Gastric	stomach
38	chr10:25350800-25351200	Enhancers	HSMMtube	muscle
39	chr10:25350800-25351400	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr10:25350800-25351600	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr10:25350800-25351600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr10:25350800-25351600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:25350800-25351800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:25350800-25351800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr10:25350800-25351800	Flanking Active TSS	HepG2	liver
46	chr10:25350800-25351800	Flanking Active TSS	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links