Variant report

Variant	rs41279894
Chromosome Location	chr10:25313348-25313349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25305870..25307859-chr10:25312050..25313670,2	K562	blood:
2	chr10:25304238..25308721-chr10:25308828..25316334,14	MCF-7	breast:
3	chr10:25011848..25014443-chr10:25313188..25315931,2	K562	blood:
4	chr10:25309325..25311704-chr10:25312754..25314813,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000107863	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1124490	1.00[EUR][1000 genomes]
rs12241288	1.00[EUR][1000 genomes]
rs12248877	0.86[EUR][1000 genomes]
rs12261100	0.93[EUR][1000 genomes]
rs1388926	0.93[EUR][1000 genomes]
rs1409305	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1552772	1.00[EUR][1000 genomes]
rs16925193	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925198	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3808907	0.87[EUR][1000 genomes]
rs41279882	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279886	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41304607	0.93[EUR][1000 genomes]
rs41307498	0.93[EUR][1000 genomes]
rs55788231	0.93[EUR][1000 genomes]
rs57639701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57642444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57695610	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58164169	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58320082	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59189661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59876862	0.93[EUR][1000 genomes]
rs60880723	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61278248	1.00[EUR][1000 genomes]
rs61585865	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482464	1.00[EUR][1000 genomes]
rs7072278	0.80[EUR][1000 genomes]
rs7073171	0.93[EUR][1000 genomes]
rs7075327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080371	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7083691	0.93[EUR][1000 genomes]
rs7099168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73606594	0.93[EUR][1000 genomes]
rs73606599	1.00[EUR][1000 genomes]
rs73606600	1.00[EUR][1000 genomes]
rs73608203	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608204	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608206	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608208	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608210	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608211	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608212	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608214	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608216	0.93[EUR][1000 genomes]
rs73608217	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608218	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608219	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608223	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608225	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608226	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608229	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608234	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608237	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608238	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608239	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608240	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608241	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7905478	1.00[EUR][1000 genomes]
rs7920527	0.93[EUR][1000 genomes]
rs9663998	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25306600-25314000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:25306600-25315400	Weak transcription	NHDF-Ad	bronchial
3	chr10:25306600-25316400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:25307000-25314400	Weak transcription	Fetal Kidney	kidney
5	chr10:25307000-25316400	Weak transcription	Brain Germinal Matrix	brain
6	chr10:25307000-25316800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr10:25307000-25317000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:25307000-25317000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:25307000-25325400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:25307200-25314800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:25307400-25314200	Weak transcription	Liver	Liver
12	chr10:25307400-25314400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:25307400-25314400	Weak transcription	Fetal Intestine Large	intestine
14	chr10:25307400-25315800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr10:25307400-25316200	Weak transcription	Fetal Lung	lung
16	chr10:25307600-25314000	Weak transcription	Dnd41	blood
17	chr10:25307600-25316400	Weak transcription	Primary B cells from cord blood	blood
18	chr10:25308000-25314600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:25308800-25314600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr10:25312400-25313800	Enhancers	HUVEC	blood vessel
21	chr10:25312400-25314000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:25312600-25313400	Enhancers	Brain Substantia Nigra	brain
23	chr10:25312600-25315200	Strong transcription	Primary T cells from cord blood	blood
24	chr10:25312600-25316000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:25312800-25314800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:25312800-25316600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:25313000-25313400	Enhancers	Aorta	Aorta
28	chr10:25313000-25313400	Enhancers	Brain Anterior Caudate	brain
29	chr10:25313000-25314400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:25313000-25315200	Weak transcription	Brain Angular Gyrus	brain
31	chr10:25313200-25313400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:25313200-25313800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:25313200-25313800	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr10:25313200-25313800	Enhancers	Osteobl	bone
35	chr10:25313200-25314000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:25313200-25314200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:25313200-25315200	Weak transcription	Ovary	ovary

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