Variant report

Variant	rs59189661
Chromosome Location	chr10:25336419-25336420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25304583..25307026-chr10:25335686..25338076,2	MCF-7	breast:
2	chr10:25334592..25336921-chr10:25350299..25353033,2	K562	blood:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1124490	1.00[EUR][1000 genomes]
rs12241288	1.00[EUR][1000 genomes]
rs12248877	0.86[EUR][1000 genomes]
rs12261100	0.93[EUR][1000 genomes]
rs1388926	0.93[EUR][1000 genomes]
rs1409305	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1552772	1.00[EUR][1000 genomes]
rs16925193	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16925198	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3808907	0.87[EUR][1000 genomes]
rs41279882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41279894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41304607	0.93[EUR][1000 genomes]
rs41307498	0.93[EUR][1000 genomes]
rs55788231	0.93[EUR][1000 genomes]
rs57639701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57642444	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57695610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58164169	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58320082	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59876862	0.93[EUR][1000 genomes]
rs60880723	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61278248	1.00[EUR][1000 genomes]
rs61585865	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482464	1.00[EUR][1000 genomes]
rs7072278	0.80[EUR][1000 genomes]
rs7073171	0.93[EUR][1000 genomes]
rs7075327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080371	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7083691	0.93[EUR][1000 genomes]
rs7099168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73606594	0.93[EUR][1000 genomes]
rs73606599	1.00[EUR][1000 genomes]
rs73606600	1.00[EUR][1000 genomes]
rs73608203	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608204	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608210	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608211	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608214	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608216	0.93[EUR][1000 genomes]
rs73608217	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608218	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608219	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73608223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608226	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608229	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608234	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608237	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608238	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608239	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608240	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608241	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7905478	1.00[EUR][1000 genomes]
rs7920527	0.93[EUR][1000 genomes]
rs9663998	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25335400-25337000	Enhancers	K562	blood
2	chr10:25335600-25337200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:25335600-25338000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr10:25336000-25336800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:25336000-25337800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:25336000-25337800	Enhancers	HMEC	breast
7	chr10:25336000-25338000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:25336000-25338000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:25336200-25336600	Enhancers	Brain Angular Gyrus	brain
10	chr10:25336200-25337200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:25336200-25337400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr10:25336200-25337600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:25336200-25337600	Enhancers	Osteobl	bone
14	chr10:25336200-25337800	Enhancers	NHEK	skin
15	chr10:25336200-25338200	Enhancers	Fetal Intestine Small	intestine
16	chr10:25336400-25336800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:25336400-25336800	Enhancers	Ovary	ovary
18	chr10:25336400-25336800	Enhancers	NH-A	brain
19	chr10:25336400-25337000	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr10:25336400-25337200	Enhancers	Adipose Nuclei	Adipose
21	chr10:25336400-25337400	Weak transcription	Fetal Brain Female	brain
22	chr10:25336400-25337600	Enhancers	HSMM	muscle
23	chr10:25336400-25338200	Enhancers	Brain Anterior Caudate	brain

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