Variant report

Variant	rs73608226
Chromosome Location	chr10:25310633-25310634
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25010793..25013391-chr10:25309211..25311072,2	MCF-7	breast:
2	chr10:25310470..25312608-chr10:25316004..25319067,3	MCF-7	breast:
3	chr10:25304238..25308721-chr10:25308828..25316334,14	MCF-7	breast:
4	chr10:25308766..25310925-chr10:25358161..25359867,2	K562	blood:
5	chr10:25309325..25311704-chr10:25312754..25314813,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000151023	Chromatin interaction
ENSG00000107863	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1124490	0.87[EUR][1000 genomes]
rs12241288	0.87[EUR][1000 genomes]
rs12261100	0.81[EUR][1000 genomes]
rs1388926	0.81[EUR][1000 genomes]
rs1409305	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1552772	0.87[EUR][1000 genomes]
rs16925193	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16925198	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41279882	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41279886	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41279890	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41279894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41304607	0.81[EUR][1000 genomes]
rs41307498	0.81[EUR][1000 genomes]
rs55788231	0.81[EUR][1000 genomes]
rs57639701	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57642444	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57695610	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58164169	0.90[AMR][1000 genomes]
rs58320082	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59189661	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59876862	0.81[EUR][1000 genomes]
rs60880723	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61278248	0.87[EUR][1000 genomes]
rs61585865	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6482464	0.87[EUR][1000 genomes]
rs7073171	0.81[EUR][1000 genomes]
rs7075327	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7080371	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7083691	0.81[EUR][1000 genomes]
rs7099168	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73606594	0.81[EUR][1000 genomes]
rs73606599	0.87[EUR][1000 genomes]
rs73606600	0.87[EUR][1000 genomes]
rs73608203	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608204	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608206	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608208	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608210	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73608211	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608212	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608214	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73608216	0.81[EUR][1000 genomes]
rs73608217	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73608218	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73608219	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73608223	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608229	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608233	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608234	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608235	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608236	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608237	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608238	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608239	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608240	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73608241	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7905478	0.87[EUR][1000 genomes]
rs7920527	0.81[EUR][1000 genomes]
rs9663998	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418576	chr10:25295995-25311122	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25306400-25312400	Weak transcription	Ovary	ovary
2	chr10:25306600-25312000	Weak transcription	Adipose Nuclei	Adipose
3	chr10:25306600-25314000	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:25306600-25315400	Weak transcription	NHDF-Ad	bronchial
5	chr10:25306600-25316400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:25307000-25311000	Weak transcription	HUVEC	blood vessel
7	chr10:25307000-25313200	Weak transcription	Osteobl	bone
8	chr10:25307000-25314400	Weak transcription	Fetal Kidney	kidney
9	chr10:25307000-25316400	Weak transcription	Brain Germinal Matrix	brain
10	chr10:25307000-25316800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr10:25307000-25317000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:25307000-25317000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:25307000-25325400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:25307200-25314800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:25307400-25312200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:25307400-25312400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:25307400-25312600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:25307400-25312800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:25307400-25313000	Weak transcription	Brain Anterior Caudate	brain
20	chr10:25307400-25314200	Weak transcription	Liver	Liver
21	chr10:25307400-25314400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:25307400-25314400	Weak transcription	Fetal Intestine Large	intestine
23	chr10:25307400-25315800	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr10:25307400-25316200	Weak transcription	Fetal Lung	lung
25	chr10:25307600-25311200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr10:25307600-25312000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:25307600-25312200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:25307600-25312600	Weak transcription	Primary T cells from cord blood	blood
29	chr10:25307600-25312600	Weak transcription	Brain Substantia Nigra	brain
30	chr10:25307600-25313000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:25307600-25314000	Weak transcription	Dnd41	blood
32	chr10:25307600-25316400	Weak transcription	Primary B cells from cord blood	blood
33	chr10:25308000-25314600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:25308800-25314600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr10:25309800-25311800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:25310000-25312800	Weak transcription	Brain Angular Gyrus	brain

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