Variant report

Variant	rs7918015
Chromosome Location	chr10:25216991-25216992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25216805..25220140-chr10:25223845..25226604,5	K562	blood:
2	chr10:25196992..25199885-chr10:25216182..25217857,2	K562	blood:

Variant related genes	Relation type
ENSG00000240294	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11014282	0.83[ASN][1000 genomes]
rs11014306	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014307	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014308	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014309	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255703	1.00[CEU][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256206	1.00[CEU][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257709	0.83[ASN][1000 genomes]
rs1409306	1.00[CEU][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925135	0.83[ASN][1000 genomes]
rs16925138	0.83[ASN][1000 genomes]
rs16925145	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220708	0.83[ASN][1000 genomes]
rs4504964	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57654443	1.00[ASN][1000 genomes]
rs57681668	0.83[ASN][1000 genomes]
rs59876862	1.00[ASN][1000 genomes]
rs61854283	0.83[ASN][1000 genomes]
rs6482453	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs6482454	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482455	1.00[CEU][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482465	0.83[ASN][1000 genomes]
rs7072126	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs7075926	1.00[ASN][1000 genomes]
rs7078660	1.00[CEU][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080496	0.83[ASN][1000 genomes]
rs7084900	1.00[CEU][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087994	0.82[CEU][hapmap]
rs7100005	1.00[ASN][1000 genomes]
rs73606586	1.00[ASN][1000 genomes]
rs73606590	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606602	1.00[ASN][1000 genomes]
rs73608205	1.00[ASN][1000 genomes]
rs7905478	1.00[ASN][1000 genomes]
rs7910241	1.00[CEU][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25191600-25240600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:25195400-25223400	Weak transcription	Fetal Brain Female	brain
3	chr10:25198200-25228000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:25198400-25217800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:25202400-25218000	Weak transcription	Fetal Lung	lung
6	chr10:25210400-25236600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:25210600-25217000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:25210600-25218200	Weak transcription	Ovary	ovary
9	chr10:25210600-25218800	Weak transcription	Right Atrium	heart
10	chr10:25210600-25233400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:25210600-25233400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:25210800-25218000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:25210800-25218000	Weak transcription	NHLF	lung
14	chr10:25210800-25218200	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:25211400-25218800	Weak transcription	A549	lung
16	chr10:25211400-25239800	Weak transcription	Fetal Kidney	kidney
17	chr10:25211600-25218000	Weak transcription	K562	blood
18	chr10:25211800-25218000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:25212000-25218400	Weak transcription	NHDF-Ad	bronchial
20	chr10:25212200-25218000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:25212400-25224800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:25214000-25223200	Weak transcription	Brain Germinal Matrix	brain
23	chr10:25214600-25217600	Enhancers	Brain Anterior Caudate	brain
24	chr10:25214800-25217200	Enhancers	Brain Substantia Nigra	brain
25	chr10:25215000-25218200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:25215000-25223400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:25215200-25218200	Weak transcription	Fetal Brain Male	brain
28	chr10:25215400-25219400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr10:25215600-25219800	Weak transcription	Left Ventricle	heart
30	chr10:25215800-25217400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:25215800-25218000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:25215800-25218000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:25215800-25218200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:25215800-25223400	Weak transcription	Fetal Intestine Small	intestine
35	chr10:25215800-25224400	Weak transcription	Fetal Stomach	stomach
36	chr10:25215800-25240000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:25216000-25217600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr10:25216400-25217600	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr10:25216400-25218000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:25216400-25218000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:25216600-25218200	Weak transcription	Brain Angular Gyrus	brain
42	chr10:25216600-25218400	Enhancers	Primary T cells fromperipheralblood	blood
43	chr10:25216600-25218600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr10:25216600-25218600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:25216800-25217400	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr10:25216800-25218200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr10:25216800-25219200	Enhancers	Dnd41	blood

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