Variant report

Variant	rs6482454
Chromosome Location	chr10:25197073-25197074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11014282	0.83[ASN][1000 genomes]
rs11014306	0.82[EUR][1000 genomes]
rs11014307	0.82[EUR][1000 genomes]
rs11014308	0.82[EUR][1000 genomes]
rs11014309	0.82[EUR][1000 genomes]
rs12255703	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256206	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257709	0.83[ASN][1000 genomes]
rs1409306	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925135	0.83[ASN][1000 genomes]
rs16925138	0.83[ASN][1000 genomes]
rs16925145	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220708	0.83[ASN][1000 genomes]
rs4504964	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57654443	1.00[ASN][1000 genomes]
rs57681668	0.83[ASN][1000 genomes]
rs59876862	1.00[ASN][1000 genomes]
rs61854283	0.83[ASN][1000 genomes]
rs6482453	1.00[CEU][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482455	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482465	0.83[ASN][1000 genomes]
rs7072126	1.00[CEU][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075926	1.00[ASN][1000 genomes]
rs7078660	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080496	0.83[ASN][1000 genomes]
rs7084900	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087994	1.00[CEU][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7100005	1.00[ASN][1000 genomes]
rs73606586	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606590	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606602	1.00[ASN][1000 genomes]
rs73608205	1.00[ASN][1000 genomes]
rs7905478	1.00[ASN][1000 genomes]
rs7910241	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918015	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25177400-25200400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:25187000-25199200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:25191000-25197400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:25191400-25200800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:25191600-25197600	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:25191600-25197600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:25191600-25200200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:25191600-25200800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr10:25191600-25201400	Weak transcription	Fetal Lung	lung
10	chr10:25191600-25202600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:25191600-25240600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:25191800-25197400	Weak transcription	NHDF-Ad	bronchial
13	chr10:25191800-25197600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:25191800-25197600	Weak transcription	NHLF	lung
15	chr10:25191800-25197800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:25192200-25197400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:25192200-25197400	Weak transcription	Stomach Mucosa	stomach
18	chr10:25192200-25204400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:25192400-25197400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:25192600-25199000	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:25192800-25197800	Weak transcription	Small Intestine	intestine
22	chr10:25193400-25210200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr10:25193600-25197200	Weak transcription	Brain Substantia Nigra	brain
24	chr10:25194600-25197400	Weak transcription	Fetal Intestine Large	intestine
25	chr10:25194600-25197600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:25195200-25203400	Weak transcription	Aorta	Aorta
27	chr10:25195400-25223400	Weak transcription	Fetal Brain Female	brain
28	chr10:25195600-25197200	Weak transcription	K562	blood
29	chr10:25196200-25197400	Weak transcription	A549	lung
30	chr10:25196200-25197600	Weak transcription	Fetal Intestine Small	intestine
31	chr10:25196400-25198800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr10:25196400-25212000	Weak transcription	Fetal Stomach	stomach
33	chr10:25197000-25197800	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr10:25197000-25198000	Enhancers	Brain Angular Gyrus	brain
35	chr10:25197000-25198400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:25197000-25199000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:25197000-25199000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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