Variant report

Variant	rs7072126
Chromosome Location	chr10:25186482-25186483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25183976..25186724-chr10:25246241..25248282,2	K562	blood:
2	chr10:25181922..25187285-chr10:25188265..25192840,10	K562	blood:
3	chr10:25184955..25187066-chr10:25304443..25307289,3	K562	blood:
4	chr10:25185224..25188067-chr10:25210263..25212311,2	K562	blood:

Variant related genes	Relation type
ENSG00000185875	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10828735	1.00[JPT][hapmap]
rs11014282	0.83[ASN][1000 genomes]
rs11014306	0.81[CEU][hapmap]
rs11014307	0.81[CEU][hapmap]
rs11014308	0.81[CEU][hapmap];1.00[GIH][hapmap]
rs11014309	0.81[CEU][hapmap];1.00[GIH][hapmap]
rs12255703	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12256206	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12257709	0.83[ASN][1000 genomes]
rs1409306	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16925135	0.83[ASN][1000 genomes]
rs16925138	0.83[ASN][1000 genomes]
rs16925145	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2220708	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4504964	1.00[ASN][1000 genomes]
rs57654443	1.00[ASN][1000 genomes]
rs57681668	0.83[ASN][1000 genomes]
rs59876862	1.00[ASN][1000 genomes]
rs61854283	0.83[ASN][1000 genomes]
rs6482453	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482454	1.00[CEU][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482455	0.81[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6482465	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7075926	1.00[ASN][1000 genomes]
rs7078660	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7080496	0.83[ASN][1000 genomes]
rs7084900	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7087994	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7100005	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs729141	1.00[JPT][hapmap]
rs73606586	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606590	1.00[ASN][1000 genomes]
rs73606602	1.00[ASN][1000 genomes]
rs73608205	1.00[ASN][1000 genomes]
rs7905478	1.00[ASN][1000 genomes]
rs7910241	0.81[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7918015	0.81[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25168200-25188200	Weak transcription	Brain Hippocampus Middle	brain
2	chr10:25168200-25189000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:25175800-25189800	Weak transcription	Stomach Mucosa	stomach
4	chr10:25175800-25190000	Weak transcription	Fetal Lung	lung
5	chr10:25177400-25200400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:25179400-25190400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:25179800-25189200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:25180000-25188000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:25181000-25195000	Weak transcription	Aorta	Aorta
10	chr10:25181200-25189200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:25182600-25187000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:25182600-25187200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr10:25182600-25188200	Weak transcription	Brain Substantia Nigra	brain
14	chr10:25183200-25186800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr10:25183400-25190800	Weak transcription	Thymus	Thymus
16	chr10:25183800-25187600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:25183800-25189800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:25183800-25189800	Weak transcription	HSMMtube	muscle
19	chr10:25184000-25187000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr10:25184000-25187000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr10:25184000-25187000	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr10:25184000-25187200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr10:25184000-25187200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr10:25184000-25188000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:25184000-25188400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:25184000-25190000	Weak transcription	HSMM	muscle
27	chr10:25184000-25190200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:25184000-25190200	Weak transcription	Fetal Intestine Small	intestine
29	chr10:25184000-25190200	Weak transcription	Fetal Stomach	stomach
30	chr10:25184000-25190400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:25184600-25188800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr10:25184800-25187000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:25185200-25187000	Enhancers	Primary T cells from cord blood	blood
34	chr10:25185200-25187600	Enhancers	Hela-S3	cervix
35	chr10:25185200-25190400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:25185400-25187000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:25185400-25187200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr10:25185600-25186600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:25185600-25187200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:25185800-25187200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:25186000-25186600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:25186000-25186600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:25186000-25186800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:25186000-25186800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:25186000-25186800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:25186000-25187000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:25186000-25187000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr10:25186000-25187000	Enhancers	NHLF	lung
49	chr10:25186000-25187200	Enhancers	HUVEC	blood vessel
50	chr10:25186000-25187200	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links