Variant report

Variant	rs16925145
Chromosome Location	chr10:25198782-25198783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr10:25197536-25198982	K562	blood:	n/a	n/a
2	MYC	chr10:25198025-25198808	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr10:25197934-25198833	MCF10A-Er-Src	breast:	n/a	chr10:25198150-25198161

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25174022..25176937-chr10:25198319..25200197,2	K562	blood:

Variant related genes	Relation type
RN7SKP241	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10828735	1.00[JPT][hapmap]
rs11014282	0.83[ASN][1000 genomes]
rs11014306	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014307	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014308	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11014309	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255703	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256206	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257709	0.83[ASN][1000 genomes]
rs1409306	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925135	0.83[ASN][1000 genomes]
rs16925138	0.83[ASN][1000 genomes]
rs2220708	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4504964	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57654443	1.00[ASN][1000 genomes]
rs57681668	0.83[ASN][1000 genomes]
rs59876862	1.00[ASN][1000 genomes]
rs61854283	0.83[ASN][1000 genomes]
rs6482453	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6482454	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482455	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482465	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7072126	0.81[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7075926	1.00[ASN][1000 genomes]
rs7078660	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080496	0.83[ASN][1000 genomes]
rs7084900	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087994	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs7100005	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs729141	1.00[JPT][hapmap]
rs73606586	1.00[ASN][1000 genomes]
rs73606590	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606602	1.00[ASN][1000 genomes]
rs73608205	1.00[ASN][1000 genomes]
rs7905478	1.00[ASN][1000 genomes]
rs7910241	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918015	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25177400-25200400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:25187000-25199200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:25191400-25200800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:25191600-25200200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:25191600-25200800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:25191600-25201400	Weak transcription	Fetal Lung	lung
7	chr10:25191600-25202600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:25191600-25240600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:25192200-25204400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:25192600-25199000	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:25193400-25210200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:25195200-25203400	Weak transcription	Aorta	Aorta
13	chr10:25195400-25223400	Weak transcription	Fetal Brain Female	brain
14	chr10:25196400-25198800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr10:25196400-25212000	Weak transcription	Fetal Stomach	stomach
16	chr10:25197000-25199000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:25197000-25199000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr10:25197200-25202000	Enhancers	K562	blood
19	chr10:25197400-25198800	Enhancers	Stomach Mucosa	stomach
20	chr10:25197400-25199200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:25197400-25199600	Enhancers	NHEK	skin
22	chr10:25197400-25200400	Enhancers	NHDF-Ad	bronchial
23	chr10:25197400-25205400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:25197600-25198800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr10:25197600-25199000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:25197600-25199000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:25197600-25199200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:25197600-25199200	Enhancers	HMEC	breast
29	chr10:25197600-25199400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:25197800-25201600	Weak transcription	Gastric	stomach
31	chr10:25197800-25204600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr10:25198000-25200800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:25198000-25201400	Weak transcription	NHLF	lung
34	chr10:25198000-25204200	Weak transcription	Brain Angular Gyrus	brain
35	chr10:25198200-25199800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr10:25198200-25201600	Weak transcription	Small Intestine	intestine
37	chr10:25198200-25204200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:25198200-25228000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:25198400-25199400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:25198400-25199600	Enhancers	A549	lung
41	chr10:25198400-25200200	Weak transcription	NH-A	brain
42	chr10:25198400-25201200	Weak transcription	HUVEC	blood vessel
43	chr10:25198400-25202800	Weak transcription	Osteobl	bone
44	chr10:25198400-25203800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:25198400-25204600	Weak transcription	Fetal Intestine Small	intestine
46	chr10:25198400-25217800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:25198600-25200000	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr10:25198600-25201200	Weak transcription	Muscle Satellite Cultured Cells	--

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