Variant report

Variant	rs2220708
Chromosome Location	chr10:25251124-25251125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25249933..25252062-chr10:25253513..25255370,2	K562	blood:
2	chr10:25241989..25244584-chr10:25249705..25252162,2	K562	blood:
3	chr10:25245492..25247955-chr10:25250126..25255906,6	K562	blood:
4	chr10:25247331..25249191-chr10:25250892..25252759,2	MCF-7	breast:
5	chr10:25241943..25244006-chr10:25248893..25251867,4	MCF-7	breast:
6	chr10:25247885..25251535-chr10:25304121..25307402,5	K562	blood:
7	chr10:25249069..25251777-chr10:25273564..25275756,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273107	Chromatin interaction
ENSG00000151023	Chromatin interaction
ENSG00000185875	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10508687	0.90[EUR][1000 genomes]
rs10828735	1.00[JPT][hapmap]
rs10828736	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10828742	0.90[EUR][1000 genomes]
rs10828756	0.86[EUR][1000 genomes]
rs11014355	0.88[EUR][1000 genomes]
rs11014374	0.86[EUR][1000 genomes]
rs11014376	0.88[EUR][1000 genomes]
rs11014385	0.81[EUR][1000 genomes]
rs12242409	0.90[EUR][1000 genomes]
rs12255703	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12256206	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1409306	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16925145	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4504964	0.83[ASN][1000 genomes]
rs57654443	0.83[ASN][1000 genomes]
rs59876862	0.98[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6482453	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6482454	0.83[ASN][1000 genomes]
rs6482455	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6482465	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072126	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7075926	0.83[ASN][1000 genomes]
rs7078660	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7080496	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084900	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7087994	1.00[JPT][hapmap]
rs7100005	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs729141	1.00[JPT][hapmap]
rs73606586	0.83[ASN][1000 genomes]
rs73606590	0.83[ASN][1000 genomes]
rs73606602	0.83[ASN][1000 genomes]
rs73608205	0.83[ASN][1000 genomes]
rs7905478	0.83[ASN][1000 genomes]
rs7910241	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7918015	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25242400-25251400	Weak transcription	Liver	Liver
2	chr10:25242400-25252800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:25242800-25251400	Weak transcription	Fetal Intestine Large	intestine
4	chr10:25242800-25251600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:25243000-25251400	Weak transcription	Fetal Intestine Small	intestine
6	chr10:25247800-25251600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:25248200-25251600	Weak transcription	NHEK	skin
8	chr10:25248200-25253800	Weak transcription	Right Atrium	heart
9	chr10:25248400-25251600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:25248400-25251600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:25248400-25256600	Weak transcription	Fetal Brain Male	brain
12	chr10:25248400-25256600	Weak transcription	Fetal Kidney	kidney
13	chr10:25248600-25251600	Weak transcription	A549	lung
14	chr10:25248600-25251600	Weak transcription	Hela-S3	cervix
15	chr10:25248600-25251600	Weak transcription	NH-A	brain
16	chr10:25248600-25251800	Weak transcription	K562	blood
17	chr10:25249200-25252600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:25249200-25252800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:25249200-25258600	Weak transcription	Brain Anterior Caudate	brain
20	chr10:25249200-25258600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:25249200-25262200	Weak transcription	Fetal Stomach	stomach
22	chr10:25249200-25263800	Weak transcription	Ovary	ovary
23	chr10:25249400-25251800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:25249400-25258200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:25249800-25253000	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:25250600-25252400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr10:25250600-25253200	Enhancers	HMEC	breast
28	chr10:25250800-25252200	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr10:25251000-25251400	Weak transcription	Stomach Mucosa	stomach
30	chr10:25251000-25263800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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