Variant report
| Variant | rs10828742 |
|---|---|
| Chromosome Location | chr10:25319971-25319972 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000185875 | Chromatin interaction |
| ENSG00000151023 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10508684 | 1.00[ASN][1000 genomes] |
| rs10508687 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10828746 | 1.00[ASN][1000 genomes] |
| rs10828756 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11014323 | 1.00[ASN][1000 genomes] |
| rs11014328 | 1.00[ASN][1000 genomes] |
| rs11014332 | 1.00[ASN][1000 genomes] |
| rs11014335 | 1.00[ASN][1000 genomes] |
| rs11014339 | 1.00[ASN][1000 genomes] |
| rs11014343 | 1.00[ASN][1000 genomes] |
| rs11014355 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11014363 | 1.00[ASN][1000 genomes] |
| rs11014370 | 1.00[ASN][1000 genomes] |
| rs11014371 | 1.00[ASN][1000 genomes] |
| rs11014373 | 1.00[ASN][1000 genomes] |
| rs11014374 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11014376 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11014378 | 1.00[ASN][1000 genomes] |
| rs11014385 | 0.91[EUR][1000 genomes] |
| rs12242409 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12261100 | 0.86[AFR][1000 genomes] |
| rs12359325 | 1.00[ASN][1000 genomes] |
| rs1388926 | 0.93[AFR][1000 genomes] |
| rs16925243 | 1.00[ASN][1000 genomes] |
| rs16925280 | 1.00[ASN][1000 genomes] |
| rs16925307 | 1.00[ASN][1000 genomes] |
| rs2220708 | 0.90[EUR][1000 genomes] |
| rs61853351 | 1.00[ASN][1000 genomes] |
| rs61856073 | 1.00[ASN][1000 genomes] |
| rs61856075 | 1.00[ASN][1000 genomes] |
| rs6482465 | 0.88[EUR][1000 genomes] |
| rs7080496 | 0.88[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25307000-25325400 | Weak transcription | Primary hematopoietic stem cells | blood |
| 2 | chr10:25319400-25320200 | Weak transcription | Liver | Liver |
