Variant report

Variant	rs11014371
Chromosome Location	chr10:25352833-25352834
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:25349510..25351855-chr10:25352161..25354821,2	MCF-7	breast:
2	chr10:25344528..25346562-chr10:25350767..25353027,3	K562	blood:
3	chr10:25303827..25307133-chr10:25349437..25354097,8	K562	blood:
4	chr10:25334592..25336921-chr10:25350299..25353033,2	K562	blood:
5	chr10:25303827..25307969-chr10:25351029..25354599,5	K562	blood:
6	chr10:25304955..25307281-chr10:25348708..25354586,7	MCF-7	breast:
7	chr10:25306123..25307821-chr10:25350955..25353147,2	MCF-7	breast:
8	chr10:25345062..25348953-chr10:25349936..25353027,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000151023	Chromatin interaction
ENSG00000185875	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10508683	1.00[GIH][hapmap]
rs10508684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508687	1.00[ASN][1000 genomes]
rs10828742	1.00[ASN][1000 genomes]
rs10828746	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014323	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014328	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11014332	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014335	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014339	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014343	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014355	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11014363	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014370	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014374	1.00[ASN][1000 genomes]
rs11014376	1.00[ASN][1000 genomes]
rs11014378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014380	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12146293	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12242409	1.00[ASN][1000 genomes]
rs12258541	1.00[GIH][hapmap]
rs12359325	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925243	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925280	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41279888	0.82[EUR][1000 genomes]
rs61853351	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856073	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61856075	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901590	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25351600-25353000	Weak transcription	NHEK	skin
2	chr10:25351600-25353400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:25351600-25353600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:25351600-25354000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:25351600-25357000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:25351600-25357200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:25351800-25353000	Enhancers	K562	blood
8	chr10:25351800-25356800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:25351800-25356800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:25351800-25356800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:25351800-25356800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:25351800-25356800	Weak transcription	HUVEC	blood vessel
13	chr10:25351800-25356800	Weak transcription	NH-A	brain
14	chr10:25351800-25356800	Weak transcription	Osteobl	bone
15	chr10:25352200-25356800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:25352400-25353600	Enhancers	HMEC	breast
17	chr10:25352400-25354200	Weak transcription	HepG2	liver
18	chr10:25352400-25356800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:25352800-25354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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