Variant report
| Variant | rs12146293 |
|---|---|
| Chromosome Location | chr10:25361788-25361789 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10508683 | 1.00[CHB][hapmap] |
| rs10508684 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10828746 | 0.83[EUR][1000 genomes] |
| rs11014323 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11014328 | 0.91[AMR][1000 genomes] |
| rs11014335 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11014339 | 0.91[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs11014343 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11014355 | 1.00[CEU][hapmap] |
| rs11014363 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11014370 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11014371 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11014373 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11014378 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11014380 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11014386 | 1.00[CHB][hapmap] |
| rs12252715 | 1.00[CHB][hapmap] |
| rs12258541 | 1.00[CHB][hapmap] |
| rs12266610 | 1.00[CHB][hapmap] |
| rs12266753 | 1.00[CHB][hapmap] |
| rs12359325 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs16925243 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs16925280 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs16925307 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2148208 | 1.00[CHB][hapmap] |
| rs41279888 | 0.81[EUR][1000 genomes] |
| rs61853351 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs61856073 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs61856075 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7901590 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv550224 | chr10:25335854-25385858 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1036683 | chr10:25337592-25398119 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv894969 | chr10:25345720-25395579 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25361400-25362400 | Enhancers | HUVEC | blood vessel |
