Variant report

Variant	rs2148208
Chromosome Location	chr10:25397192-25397193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10508683	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11014386	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12249452	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12252715	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12252765	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266610	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12266753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16925368	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17532593	1.00[ASN][1000 genomes]
rs17616467	1.00[ASN][1000 genomes]
rs1926051	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34675238	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41279898	1.00[ASN][1000 genomes]
rs56176936	1.00[ASN][1000 genomes]
rs56281542	1.00[ASN][1000 genomes]
rs57545487	1.00[ASN][1000 genomes]
rs59098941	1.00[ASN][1000 genomes]
rs60598875	1.00[ASN][1000 genomes]
rs72782211	0.86[ASN][1000 genomes]
rs72782215	1.00[ASN][1000 genomes]
rs72782217	1.00[ASN][1000 genomes]
rs72782219	1.00[ASN][1000 genomes]
rs72782220	1.00[ASN][1000 genomes]
rs72782221	1.00[ASN][1000 genomes]
rs72782222	1.00[ASN][1000 genomes]
rs72782223	1.00[ASN][1000 genomes]
rs72782224	1.00[ASN][1000 genomes]
rs72782225	1.00[ASN][1000 genomes]
rs72782226	1.00[ASN][1000 genomes]
rs72782228	1.00[ASN][1000 genomes]
rs72782229	1.00[ASN][1000 genomes]
rs72792045	1.00[ASN][1000 genomes]
rs72792046	1.00[ASN][1000 genomes]
rs72792048	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901590	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25392400-25414200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:25393400-25398400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:25394000-25402000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:25394600-25397200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:25395000-25400400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:25395000-25401800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:25395000-25402400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:25395000-25405000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:25395400-25397200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:25395800-25397200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:25396800-25398000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr10:25397000-25397200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:25397000-25397400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:25397000-25398000	Enhancers	HUES6 Cell Line	embryonic stem cell

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