Variant report

Variant	rs12252765
Chromosome Location	chr10:25391318-25391319
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25011194..25013594-chr10:25390011..25392696,2	K562	blood:

Variant related genes	Relation type
ENSG00000107863	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10508683	1.00[CEU][hapmap]
rs11014386	1.00[CEU][hapmap]
rs12249452	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12252715	1.00[CEU][hapmap]
rs12258541	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266610	1.00[CEU][hapmap]
rs12266753	1.00[CEU][hapmap]
rs16925368	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17532593	1.00[ASN][1000 genomes]
rs17616467	1.00[ASN][1000 genomes]
rs1926051	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148208	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34675238	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41279898	1.00[ASN][1000 genomes]
rs56176936	1.00[ASN][1000 genomes]
rs56281542	1.00[ASN][1000 genomes]
rs57545487	1.00[ASN][1000 genomes]
rs59098941	1.00[ASN][1000 genomes]
rs60598875	1.00[ASN][1000 genomes]
rs7072278	0.84[AFR][1000 genomes]
rs72782211	0.86[ASN][1000 genomes]
rs72782215	1.00[ASN][1000 genomes]
rs72782217	1.00[ASN][1000 genomes]
rs72782219	1.00[ASN][1000 genomes]
rs72782220	1.00[ASN][1000 genomes]
rs72782221	1.00[ASN][1000 genomes]
rs72782222	1.00[ASN][1000 genomes]
rs72782223	1.00[ASN][1000 genomes]
rs72782224	1.00[ASN][1000 genomes]
rs72782225	1.00[ASN][1000 genomes]
rs72782226	1.00[ASN][1000 genomes]
rs72782228	1.00[ASN][1000 genomes]
rs72782229	1.00[ASN][1000 genomes]
rs72792045	1.00[ASN][1000 genomes]
rs72792046	1.00[ASN][1000 genomes]
rs72792048	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901590	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25386000-25393400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:25386000-25393400	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:25386000-25393400	Weak transcription	Brain Substantia Nigra	brain
4	chr10:25388800-25392800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:25388800-25394400	Enhancers	Fetal Brain Male	brain
6	chr10:25388800-25395200	Enhancers	Fetal Brain Female	brain
7	chr10:25389800-25392800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:25389800-25394600	Enhancers	Brain Germinal Matrix	brain
9	chr10:25390200-25391400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr10:25390200-25393000	Enhancers	K562	blood
11	chr10:25390400-25391600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:25390400-25391800	Enhancers	Fetal Heart	heart
13	chr10:25390400-25392400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:25390600-25391600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:25390600-25393600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:25390600-25394600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr10:25390600-25395000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr10:25390800-25391600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr10:25390800-25392000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:25390800-25393600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:25390800-25393800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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