Variant report

Variant	rs17616467
Chromosome Location	chr10:25395579-25395580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10508683	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap]
rs11014370	1.00[GIH][hapmap];1.00[MKK][hapmap]
rs11014371	1.00[GIH][hapmap];1.00[MKK][hapmap]
rs11014386	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs12249452	0.87[ASN][1000 genomes]
rs12252715	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs12252765	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs12258541	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12266610	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs12266753	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16925368	1.00[ASN][1000 genomes]
rs17532593	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926051	1.00[ASN][1000 genomes]
rs2148208	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34675238	1.00[ASN][1000 genomes]
rs41279898	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56176936	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56281542	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57545487	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59098941	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60598875	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61084611	0.93[AMR][1000 genomes]
rs72782210	0.85[AMR][1000 genomes]
rs72782211	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72782214	1.00[AMR][1000 genomes]
rs72782215	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782216	0.93[EUR][1000 genomes]
rs72782217	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782219	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782220	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782221	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782222	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782223	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782224	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782225	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782226	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782227	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72782228	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782229	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782230	0.93[EUR][1000 genomes]
rs72792045	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792046	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792047	0.93[AMR][1000 genomes]
rs72792048	1.00[ASN][1000 genomes]
rs7901590	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25392200-25397000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:25392400-25414200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:25393400-25395600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr10:25393400-25398400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:25393600-25395800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:25394000-25402000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:25394600-25397200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:25395000-25400400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:25395000-25401800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:25395000-25402400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:25395000-25405000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:25395400-25396800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:25395400-25397200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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