Variant report

Variant	rs60598875
Chromosome Location	chr10:25413946-25413947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12249452	0.87[ASN][1000 genomes]
rs12252765	1.00[ASN][1000 genomes]
rs12258541	1.00[ASN][1000 genomes]
rs16925368	1.00[ASN][1000 genomes]
rs16925389	0.93[AFR][1000 genomes]
rs16925393	0.93[AFR][1000 genomes]
rs17532593	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17616467	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926051	1.00[ASN][1000 genomes]
rs2148208	1.00[ASN][1000 genomes]
rs34675238	1.00[ASN][1000 genomes]
rs41279898	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56176936	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56281542	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57545487	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59098941	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782211	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72782215	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782216	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72782217	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782219	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782220	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782221	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782222	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782223	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782224	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782225	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782226	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782227	0.98[EUR][1000 genomes]
rs72782228	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782229	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782230	0.93[EUR][1000 genomes]
rs72792045	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792046	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792048	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25392400-25414200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:25413400-25414800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:25413600-25415000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:25413800-25414000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:25413800-25414000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:25413800-25414000	Enhancers	Brain Anterior Caudate	brain
7	chr10:25413800-25414000	Enhancers	Brain Germinal Matrix	brain

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