Variant report

Variant	rs1926051
Chromosome Location	chr10:25412721-25412722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10128299	1.00[CEU][hapmap]
rs10508683	1.00[CEU][hapmap]
rs10508690	1.00[CEU][hapmap]
rs11014386	1.00[CEU][hapmap]
rs11014436	1.00[CEU][hapmap]
rs11014454	1.00[CEU][hapmap]
rs11014475	1.00[CEU][hapmap]
rs11014480	1.00[CEU][hapmap]
rs1124490	1.00[CEU][hapmap]
rs12249452	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12250636	1.00[CEU][hapmap]
rs12252715	1.00[CEU][hapmap]
rs12252765	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258541	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258880	1.00[CEU][hapmap]
rs12263407	1.00[CEU][hapmap]
rs12265296	1.00[CEU][hapmap]
rs12265550	1.00[CEU][hapmap]
rs12266610	1.00[CEU][hapmap]
rs12266753	1.00[CEU][hapmap]
rs1339997	1.00[CEU][hapmap]
rs1552772	1.00[CEU][hapmap]
rs16925198	1.00[CEU][hapmap]
rs16925368	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925493	1.00[CEU][hapmap]
rs16925518	1.00[CEU][hapmap]
rs17532593	1.00[ASN][1000 genomes]
rs17616467	1.00[ASN][1000 genomes]
rs2148208	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34675238	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808907	1.00[CEU][hapmap]
rs41279898	1.00[ASN][1000 genomes]
rs56176936	1.00[ASN][1000 genomes]
rs56281542	1.00[ASN][1000 genomes]
rs57545487	1.00[ASN][1000 genomes]
rs59098941	1.00[ASN][1000 genomes]
rs60598875	1.00[ASN][1000 genomes]
rs6482464	1.00[CEU][hapmap]
rs7072278	0.94[AFR][1000 genomes]
rs7073171	1.00[CEU][hapmap]
rs7074602	1.00[CEU][hapmap]
rs7075587	1.00[CEU][hapmap]
rs7077890	1.00[CEU][hapmap]
rs7080343	1.00[CEU][hapmap]
rs7090132	1.00[CEU][hapmap]
rs7099168	1.00[CEU][hapmap]
rs7101272	1.00[CEU][hapmap]
rs72782211	0.86[ASN][1000 genomes]
rs72782215	1.00[ASN][1000 genomes]
rs72782217	1.00[ASN][1000 genomes]
rs72782219	1.00[ASN][1000 genomes]
rs72782220	1.00[ASN][1000 genomes]
rs72782221	1.00[ASN][1000 genomes]
rs72782222	1.00[ASN][1000 genomes]
rs72782223	1.00[ASN][1000 genomes]
rs72782224	1.00[ASN][1000 genomes]
rs72782225	1.00[ASN][1000 genomes]
rs72782226	1.00[ASN][1000 genomes]
rs72782228	1.00[ASN][1000 genomes]
rs72782229	1.00[ASN][1000 genomes]
rs72792045	1.00[ASN][1000 genomes]
rs72792046	1.00[ASN][1000 genomes]
rs72792048	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901590	1.00[CEU][hapmap]
rs7902783	1.00[CEU][hapmap]
rs7903171	1.00[CEU][hapmap]
rs7906676	1.00[CEU][hapmap]
rs7918295	1.00[CEU][hapmap]
rs9988788	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25392400-25414200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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