Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10128299	1.00[CEU][hapmap]
rs10508690	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap]
rs11014436	1.00[CEU][hapmap]
rs11014454	1.00[CEU][hapmap]
rs11014475	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs11014480	1.00[CEU][hapmap]
rs11014525	1.00[CEU][hapmap]
rs12250636	1.00[CEU][hapmap]
rs12258880	1.00[CEU][hapmap]
rs12263407	1.00[CEU][hapmap]
rs12265296	1.00[CEU][hapmap]
rs12265550	1.00[CEU][hapmap]
rs1339997	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs16925493	1.00[CEU][hapmap]
rs16925518	1.00[CEU][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap]
rs7074602	1.00[CEU][hapmap]
rs7075587	1.00[CEU][hapmap]
rs7077890	1.00[CEU][hapmap]
rs7090132	1.00[CEU][hapmap]
rs7101272	1.00[CEU][hapmap]
rs7902783	1.00[CEU][hapmap]
rs7903171	1.00[CEU][hapmap]
rs7906676	1.00[CEU][hapmap]
rs7918295	1.00[CEU][hapmap]
rs9988788	1.00[CEU][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25521000-25522400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:25521200-25522400	Enhancers	Brain Hippocampus Middle	brain
3	chr10:25521200-25522600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:25521200-25522600	Enhancers	Brain Substantia Nigra	brain
5	chr10:25521400-25522600	Enhancers	Brain Anterior Caudate	brain
6	chr10:25521400-25522800	Enhancers	Fetal Brain Male	brain
7	chr10:25521600-25522600	Enhancers	Brain Cingulate Gyrus	brain
8	chr10:25522000-25522400	Enhancers	Brain Germinal Matrix	brain

Quick Search: