Variant report
| Variant | rs11014475 |
|---|---|
| Chromosome Location | chr10:25550451-25550452 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:25546638..25548585-chr10:25550182..25553102,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10128299 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes] |
| rs10508690 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes] |
| rs11014436 | 1.00[CEU][hapmap] |
| rs11014454 | 1.00[CEU][hapmap] |
| rs11014480 | 1.00[CEU][hapmap] |
| rs11014525 | 1.00[CEU][hapmap] |
| rs12250636 | 1.00[CEU][hapmap] |
| rs12258880 | 1.00[CEU][hapmap] |
| rs12263407 | 1.00[CEU][hapmap] |
| rs12265296 | 1.00[CEU][hapmap] |
| rs12265550 | 1.00[CEU][hapmap] |
| rs12267402 | 1.00[CEU][hapmap] |
| rs1339997 | 1.00[CEU][hapmap] |
| rs16925493 | 1.00[CEU][hapmap] |
| rs16925518 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes] |
| rs7074602 | 1.00[CEU][hapmap] |
| rs7075587 | 1.00[CEU][hapmap] |
| rs7077890 | 1.00[CEU][hapmap] |
| rs7080343 | 1.00[CEU][hapmap];0.88[YRI][hapmap] |
| rs7090132 | 1.00[CEU][hapmap] |
| rs7101272 | 1.00[CEU][hapmap] |
| rs7902783 | 1.00[CEU][hapmap] |
| rs7903171 | 1.00[CEU][hapmap] |
| rs7906676 | 1.00[CEU][hapmap] |
| rs7918295 | 1.00[CEU][hapmap] |
| rs9988788 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761583 | chr10:25525657-25722444 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3326979 | chr10:25535995-25555648 | Weak transcription Enhancers Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25549400-25551200 | Enhancers | Cortex derived primary cultured neurospheres | brain |
| 2 | chr10:25550200-25551800 | Enhancers | Pancreatic Islets | Pancreatic Islet |
