Variant report
| Variant | rs11014525 |
|---|---|
| Chromosome Location | chr10:25689276-25689277 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10128299 | 1.00[CEU][hapmap] |
| rs10159703 | 1.00[CEU][hapmap] |
| rs10508690 | 1.00[CEU][hapmap] |
| rs10508693 | 0.83[LWK][hapmap];0.87[YRI][hapmap] |
| rs10508697 | 1.00[EUR][1000 genomes] |
| rs11014454 | 1.00[CEU][hapmap] |
| rs11014475 | 1.00[CEU][hapmap] |
| rs11014480 | 1.00[CEU][hapmap] |
| rs11014524 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12250636 | 1.00[CEU][hapmap] |
| rs12258880 | 1.00[CEU][hapmap] |
| rs12263407 | 1.00[CEU][hapmap] |
| rs12266071 | 0.91[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs12267402 | 1.00[CEU][hapmap] |
| rs12268579 | 1.00[EUR][1000 genomes] |
| rs12781894 | 1.00[CEU][hapmap] |
| rs1329253 | 1.00[CEU][hapmap] |
| rs16925493 | 1.00[CEU][hapmap] |
| rs16925518 | 1.00[CEU][hapmap] |
| rs16925709 | 1.00[EUR][1000 genomes] |
| rs16926013 | 1.00[CEU][hapmap] |
| rs16926017 | 1.00[CEU][hapmap] |
| rs16926019 | 1.00[CEU][hapmap] |
| rs2026055 | 0.87[LWK][hapmap];0.81[MKK][hapmap];0.87[YRI][hapmap] |
| rs55979690 | 1.00[EUR][1000 genomes] |
| rs6482486 | 1.00[CEU][hapmap] |
| rs6482487 | 1.00[CEU][hapmap] |
| rs7074602 | 1.00[CEU][hapmap] |
| rs7077890 | 1.00[CEU][hapmap] |
| rs7080343 | 1.00[CEU][hapmap] |
| rs7085469 | 1.00[CEU][hapmap] |
| rs7094805 | 1.00[EUR][1000 genomes] |
| rs7101272 | 1.00[CEU][hapmap] |
| rs9988788 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761583 | chr10:25525657-25722444 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3349863 | chr10:25614571-25946379 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv550226 | chr10:25653017-25693426 | ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25687200-25697800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
