Variant report
| Variant | rs10508693 |
|---|---|
| Chromosome Location | chr10:25693426-25693427 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10450325 | 1.00[CHB][hapmap] |
| rs11014507 | 1.00[CHB][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap] |
| rs11014525 | 0.83[LWK][hapmap];0.87[YRI][hapmap] |
| rs12265226 | 1.00[CHB][hapmap];0.86[GIH][hapmap];0.84[LWK][hapmap];0.87[MEX][hapmap];0.83[AMR][1000 genomes] |
| rs12266071 | 0.81[AFR][1000 genomes] |
| rs12357174 | 1.00[CHB][hapmap] |
| rs1335195 | 1.00[CHB][hapmap] |
| rs1335196 | 1.00[CHB][hapmap] |
| rs1335197 | 1.00[CHB][hapmap] |
| rs16926124 | 1.00[CHB][hapmap] |
| rs16926153 | 1.00[CHB][hapmap] |
| rs16926172 | 1.00[CHB][hapmap] |
| rs17628278 | 1.00[CHB][hapmap] |
| rs1773691 | 0.92[LWK][hapmap];0.91[YRI][hapmap] |
| rs2026055 | 1.00[CHB][hapmap];0.96[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs4523593 | 1.00[CHB][hapmap] |
| rs4747532 | 1.00[CHB][hapmap] |
| rs4749026 | 0.91[YRI][hapmap] |
| rs6482497 | 1.00[CHB][hapmap] |
| rs6482498 | 1.00[CHB][hapmap] |
| rs6482499 | 1.00[CHB][hapmap] |
| rs7911892 | 1.00[CHB][hapmap] |
| rs7921299 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761583 | chr10:25525657-25722444 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3349863 | chr10:25614571-25946379 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv550226 | chr10:25653017-25693426 | ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25687200-25697800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
