Variant report

Variant	rs1335197
Chromosome Location	chr10:25870435-25870436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10458706	0.81[EUR][1000 genomes]
rs10508693	1.00[CHB][hapmap]
rs10764555	1.00[ASN][1000 genomes]
rs11014622	0.88[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014623	0.88[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014625	0.87[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014629	0.83[EUR][1000 genomes]
rs12355530	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12357174	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413247	0.82[EUR][1000 genomes]
rs1329249	1.00[ASN][1000 genomes]
rs1329250	1.00[ASN][1000 genomes]
rs1329254	1.00[ASN][1000 genomes]
rs1335195	1.00[CHB][hapmap]
rs1335196	1.00[CHB][hapmap]
rs1360124	1.00[ASN][1000 genomes]
rs1410930	1.00[ASN][1000 genomes]
rs1547685	1.00[ASN][1000 genomes]
rs16926124	1.00[CHB][hapmap]
rs16926153	1.00[CHB][hapmap]
rs16926172	1.00[CHB][hapmap]
rs17557337	1.00[ASN][1000 genomes]
rs17557638	0.88[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628278	1.00[CHB][hapmap]
rs1773635	1.00[ASN][1000 genomes]
rs17737176	1.00[ASN][1000 genomes]
rs17737261	1.00[ASN][1000 genomes]
rs1855672	0.82[EUR][1000 genomes]
rs1928364	1.00[ASN][1000 genomes]
rs1999111	1.00[ASN][1000 genomes]
rs2026055	1.00[CHB][hapmap]
rs2480346	1.00[ASN][1000 genomes]
rs2480350	1.00[ASN][1000 genomes]
rs2987837	1.00[ASN][1000 genomes]
rs3005186	1.00[ASN][1000 genomes]
rs3005188	1.00[ASN][1000 genomes]
rs3005190	1.00[ASN][1000 genomes]
rs3005192	1.00[ASN][1000 genomes]
rs3118971	1.00[ASN][1000 genomes]
rs34567803	1.00[ASN][1000 genomes]
rs4237372	0.88[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237374	0.82[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4523593	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747529	0.84[CEU][hapmap]
rs4747532	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747533	1.00[ASN][1000 genomes]
rs4749050	0.87[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55945306	1.00[ASN][1000 genomes]
rs56386940	1.00[ASN][1000 genomes]
rs58949541	1.00[ASN][1000 genomes]
rs59190298	1.00[ASN][1000 genomes]
rs61846881	1.00[ASN][1000 genomes]
rs6482497	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482498	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482499	1.00[CHB][hapmap]
rs702979	1.00[ASN][1000 genomes]
rs7070879	1.00[ASN][1000 genomes]
rs7091731	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094086	1.00[ASN][1000 genomes]
rs7099100	1.00[ASN][1000 genomes]
rs722969	1.00[ASN][1000 genomes]
rs7904866	1.00[ASN][1000 genomes]
rs7911892	1.00[CHB][hapmap]
rs7914813	0.82[EUR][1000 genomes]
rs7914821	0.82[EUR][1000 genomes]
rs7921299	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921635	1.00[ASN][1000 genomes]
rs824606	1.00[ASN][1000 genomes]
rs824611	1.00[ASN][1000 genomes]
rs866089	1.00[ASN][1000 genomes]
rs866869	1.00[ASN][1000 genomes]
rs976361	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv894972	chr10:25849998-25917909	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25861600-25873800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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