Variant report

Variant	rs7904866
Chromosome Location	chr10:25742281-25742282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25741449..25743230-chr10:25748378..25750112,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10450325	1.00[CHD][hapmap]
rs10508690	1.00[CHD][hapmap]
rs10764555	1.00[ASN][1000 genomes]
rs11014507	1.00[CHD][hapmap]
rs11014622	1.00[ASN][1000 genomes]
rs11014623	1.00[ASN][1000 genomes]
rs11014625	1.00[ASN][1000 genomes]
rs12355530	1.00[ASN][1000 genomes]
rs12357174	1.00[ASN][1000 genomes]
rs1329249	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs1329250	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs1329254	1.00[ASN][1000 genomes]
rs1335197	1.00[ASN][1000 genomes]
rs1360124	1.00[ASN][1000 genomes]
rs1410930	1.00[ASN][1000 genomes]
rs1547685	1.00[ASN][1000 genomes]
rs17557337	1.00[ASN][1000 genomes]
rs17557638	1.00[ASN][1000 genomes]
rs1773635	1.00[ASN][1000 genomes]
rs1928364	1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[ASN][1000 genomes]
rs1954261	1.00[CHD][hapmap]
rs1999111	1.00[ASN][1000 genomes]
rs2480346	1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[ASN][1000 genomes]
rs2480350	1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[ASN][1000 genomes]
rs2987837	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[ASN][1000 genomes]
rs3005186	1.00[ASN][1000 genomes]
rs3005188	1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[ASN][1000 genomes]
rs3005190	1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[ASN][1000 genomes]
rs3005192	1.00[ASN][1000 genomes]
rs3118971	1.00[ASN][1000 genomes]
rs4237372	1.00[ASN][1000 genomes]
rs4237374	1.00[ASN][1000 genomes]
rs4523593	1.00[ASN][1000 genomes]
rs4747532	1.00[ASN][1000 genomes]
rs4747533	1.00[ASN][1000 genomes]
rs4749050	1.00[ASN][1000 genomes]
rs55945306	1.00[ASN][1000 genomes]
rs6482497	1.00[ASN][1000 genomes]
rs6482498	1.00[ASN][1000 genomes]
rs702979	1.00[ASN][1000 genomes]
rs7091731	1.00[ASN][1000 genomes]
rs7921299	1.00[ASN][1000 genomes]
rs7921635	0.84[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824606	1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[ASN][1000 genomes]
rs824611	1.00[ASN][1000 genomes]
rs866089	1.00[ASN][1000 genomes]
rs866869	1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7904866	APBB1IP	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25740600-25743800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:25740600-25744600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:25742200-25744800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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