Variant report

Variant	rs3005192
Chromosome Location	chr10:25775213-25775214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25773471..25775405-chr10:25777171..25778749,2	K562	blood:
2	chr10:25762712..25764214-chr10:25774500..25776057,2	K562	blood:
3	chr10:25773088..25775353-chr10:25781192..25783925,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10764555	1.00[ASN][1000 genomes]
rs11014622	1.00[ASN][1000 genomes]
rs11014623	1.00[ASN][1000 genomes]
rs11014625	1.00[ASN][1000 genomes]
rs12355530	1.00[ASN][1000 genomes]
rs12357174	1.00[ASN][1000 genomes]
rs1329249	1.00[ASN][1000 genomes]
rs1329250	1.00[ASN][1000 genomes]
rs1329254	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335197	1.00[ASN][1000 genomes]
rs1360124	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410930	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547685	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17557337	1.00[ASN][1000 genomes]
rs17557638	1.00[ASN][1000 genomes]
rs1773635	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1928364	0.95[CEU][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999111	0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2480346	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2480350	0.95[CEU][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2987837	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3005186	0.83[CEU][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3005188	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3005190	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118971	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237372	1.00[ASN][1000 genomes]
rs4237374	1.00[ASN][1000 genomes]
rs4523593	1.00[ASN][1000 genomes]
rs4747532	1.00[ASN][1000 genomes]
rs4747533	1.00[ASN][1000 genomes]
rs4749050	1.00[ASN][1000 genomes]
rs5004466	0.83[EUR][1000 genomes]
rs55945306	1.00[ASN][1000 genomes]
rs56386940	1.00[ASN][1000 genomes]
rs58949541	1.00[ASN][1000 genomes]
rs59190298	1.00[ASN][1000 genomes]
rs61846881	1.00[ASN][1000 genomes]
rs6482497	1.00[ASN][1000 genomes]
rs6482498	1.00[ASN][1000 genomes]
rs702978	0.85[EUR][1000 genomes]
rs702979	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091731	1.00[ASN][1000 genomes]
rs7099100	1.00[ASN][1000 genomes]
rs722969	1.00[ASN][1000 genomes]
rs7904866	1.00[ASN][1000 genomes]
rs7921299	1.00[ASN][1000 genomes]
rs7921635	0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs824606	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824611	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824612	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs866089	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs866869	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25765800-25782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:25769600-25777800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:25774600-25775600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
4	chr10:25774800-25775400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr10:25774800-25775600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
6	chr10:25774800-25775800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:25775000-25775600	Enhancers	K562	blood

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