Variant report

Variant	rs56386940
Chromosome Location	chr10:25940564-25940565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr10:25940370-25940570	MCF10A-Er-Src	breast:	n/a	n/a
2	MAFK	chr10:25940521-25940792	HepG2	liver:	n/a	chr10:25940660-25940669 chr10:25940656-25940676 chr10:25940663-25940672 chr10:25940659-25940673 chr10:25940655-25940670 chr10:25940660-25940670 chr10:25940658-25940674
3	FOXA1	chr10:25940189-25940678	T-47D	breast:	n/a	n/a
4	FOXA1	chr10:25940532-25940711	T-47D	breast:	n/a	n/a
5	MAFK	chr10:25940542-25940718	K562	blood:	n/a	chr10:25940660-25940669 chr10:25940656-25940676 chr10:25940663-25940672 chr10:25940659-25940673 chr10:25940655-25940670 chr10:25940660-25940670 chr10:25940658-25940674
6	MAFK	chr10:25940532-25940689	IMR90	lung:	n/a	chr10:25940660-25940669 chr10:25940656-25940676 chr10:25940663-25940672 chr10:25940659-25940673 chr10:25940655-25940670 chr10:25940660-25940670 chr10:25940658-25940674
7	GATA3	chr10:25940094-25940741	T-47D	breast:	n/a	n/a
8	MAFK	chr10:25940493-25940836	HepG2	liver:	n/a	chr10:25940660-25940669 chr10:25940656-25940676 chr10:25940663-25940672 chr10:25940659-25940673 chr10:25940655-25940670 chr10:25940660-25940670 chr10:25940658-25940674
9	ESR1	chr10:25940018-25940694	T-47D	breast:	n/a	n/a
10	ESR1	chr10:25940102-25940704	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
GPN3P1	TF binding region

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11014622	1.00[ASN][1000 genomes]
rs11014623	1.00[ASN][1000 genomes]
rs11014625	1.00[ASN][1000 genomes]
rs12355530	1.00[ASN][1000 genomes]
rs12357174	1.00[ASN][1000 genomes]
rs1329254	1.00[ASN][1000 genomes]
rs1335197	1.00[ASN][1000 genomes]
rs1360124	1.00[ASN][1000 genomes]
rs1547685	1.00[ASN][1000 genomes]
rs17557337	1.00[ASN][1000 genomes]
rs17557638	1.00[ASN][1000 genomes]
rs1773635	1.00[ASN][1000 genomes]
rs17737176	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17737261	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1928364	1.00[ASN][1000 genomes]
rs1999111	1.00[ASN][1000 genomes]
rs2480346	1.00[ASN][1000 genomes]
rs2987837	1.00[ASN][1000 genomes]
rs3005186	1.00[ASN][1000 genomes]
rs3005188	1.00[ASN][1000 genomes]
rs3005190	1.00[ASN][1000 genomes]
rs3005192	1.00[ASN][1000 genomes]
rs3118971	1.00[ASN][1000 genomes]
rs34567803	1.00[ASN][1000 genomes]
rs4237372	1.00[ASN][1000 genomes]
rs4237374	1.00[ASN][1000 genomes]
rs4523593	1.00[ASN][1000 genomes]
rs4747532	1.00[ASN][1000 genomes]
rs4747533	1.00[ASN][1000 genomes]
rs4749050	1.00[ASN][1000 genomes]
rs55945306	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58949541	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59190298	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61846881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61846905	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482497	1.00[ASN][1000 genomes]
rs6482498	1.00[ASN][1000 genomes]
rs702979	1.00[ASN][1000 genomes]
rs7070879	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091731	1.00[ASN][1000 genomes]
rs7094086	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095138	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7099100	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722969	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906914	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7921299	1.00[ASN][1000 genomes]
rs824606	1.00[ASN][1000 genomes]
rs824611	1.00[ASN][1000 genomes]
rs866089	1.00[ASN][1000 genomes]
rs866869	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1044482	chr10:25889919-25977270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3422189	chr10:25940075-25940635	Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25940200-25940800	Enhancers	Cortex derived primary cultured neurospheres	brain

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