Variant report

Variant	rs3005186
Chromosome Location	chr10:25784261-25784262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25782933..25784846-chr10:25796060..25798061,2	K562	blood:
2	chr10:25781802..25784732-chr10:25785039..25787910,3	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10764555	1.00[ASN][1000 genomes]
rs11014622	1.00[ASN][1000 genomes]
rs11014623	1.00[ASN][1000 genomes]
rs11014625	1.00[ASN][1000 genomes]
rs12355530	1.00[ASN][1000 genomes]
rs12357174	1.00[ASN][1000 genomes]
rs1329249	1.00[ASN][1000 genomes]
rs1329250	1.00[ASN][1000 genomes]
rs1329254	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1335197	1.00[ASN][1000 genomes]
rs1360124	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1410930	0.80[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1547685	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17557337	1.00[ASN][1000 genomes]
rs17557638	1.00[ASN][1000 genomes]
rs1773635	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17737176	1.00[ASN][1000 genomes]
rs1928364	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1999111	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2480346	0.83[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2480350	1.00[ASN][1000 genomes]
rs2987837	0.83[CEU][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3005183	0.88[AMR][1000 genomes]
rs3005188	0.83[CEU][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3005190	0.83[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3005192	0.83[CEU][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3118971	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4237372	1.00[ASN][1000 genomes]
rs4237374	1.00[ASN][1000 genomes]
rs4523593	1.00[ASN][1000 genomes]
rs4747532	1.00[ASN][1000 genomes]
rs4747533	1.00[ASN][1000 genomes]
rs4749050	1.00[ASN][1000 genomes]
rs55945306	1.00[ASN][1000 genomes]
rs56386940	1.00[ASN][1000 genomes]
rs58949541	1.00[ASN][1000 genomes]
rs59190298	1.00[ASN][1000 genomes]
rs61846881	1.00[ASN][1000 genomes]
rs6482497	1.00[ASN][1000 genomes]
rs6482498	1.00[ASN][1000 genomes]
rs702979	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7091731	1.00[ASN][1000 genomes]
rs7094086	1.00[ASN][1000 genomes]
rs7099100	1.00[ASN][1000 genomes]
rs722969	1.00[ASN][1000 genomes]
rs7904866	1.00[ASN][1000 genomes]
rs7921299	1.00[ASN][1000 genomes]
rs7921635	1.00[ASN][1000 genomes]
rs824606	0.83[CEU][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs824611	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs824612	0.84[AMR][1000 genomes]
rs866089	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs866869	0.83[CEU][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25781400-25785000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:25781600-25788200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:25782200-25788200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:25782400-25792200	Weak transcription	Brain Anterior Caudate	brain
5	chr10:25782800-25785200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:25782800-25785600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:25782800-25786200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:25783000-25784400	Enhancers	K562	blood
9	chr10:25783000-25785200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:25783000-25788400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:25783200-25784800	Weak transcription	Fetal Heart	heart
12	chr10:25783200-25784800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:25783200-25785600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:25783200-25786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:25783200-25788400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:25783200-25788600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:25783200-25797200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:25783600-25785400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:25783600-25788200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:25784000-25785000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:25784000-25785000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:25784000-25785200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:25784000-25785200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:25784000-25788400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:25784200-25788600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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