Variant report

Variant	rs4749050
Chromosome Location	chr10:25865777-25865778
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10458686	0.86[EUR][1000 genomes]
rs10764555	1.00[ASN][1000 genomes]
rs10764563	0.87[EUR][1000 genomes]
rs10764564	0.87[EUR][1000 genomes]
rs10764565	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs11014622	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014623	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014625	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014630	0.87[EUR][1000 genomes]
rs11014631	0.82[CEU][hapmap];0.85[GIH][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs12355530	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12357174	0.91[CEU][hapmap];0.90[GIH][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359026	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs1329249	1.00[ASN][1000 genomes]
rs1329250	1.00[ASN][1000 genomes]
rs1329254	1.00[ASN][1000 genomes]
rs1335197	0.87[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360124	1.00[ASN][1000 genomes]
rs1410930	1.00[ASN][1000 genomes]
rs1547685	1.00[ASN][1000 genomes]
rs17556478	0.80[MKK][hapmap]
rs17557337	1.00[ASN][1000 genomes]
rs17557638	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773635	1.00[ASN][1000 genomes]
rs17737176	1.00[ASN][1000 genomes]
rs17737261	1.00[ASN][1000 genomes]
rs1928364	1.00[ASN][1000 genomes]
rs1932147	0.87[EUR][1000 genomes]
rs1999111	1.00[ASN][1000 genomes]
rs2480346	1.00[ASN][1000 genomes]
rs2480350	1.00[ASN][1000 genomes]
rs2987837	1.00[ASN][1000 genomes]
rs3005186	1.00[ASN][1000 genomes]
rs3005188	1.00[ASN][1000 genomes]
rs3005190	1.00[ASN][1000 genomes]
rs3005192	1.00[ASN][1000 genomes]
rs3118971	1.00[ASN][1000 genomes]
rs34567803	1.00[ASN][1000 genomes]
rs4237372	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237374	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4523593	0.90[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747529	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4747532	0.91[CEU][hapmap];0.90[GIH][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747533	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55945306	1.00[ASN][1000 genomes]
rs56386940	1.00[ASN][1000 genomes]
rs58254885	0.87[EUR][1000 genomes]
rs58949541	1.00[ASN][1000 genomes]
rs59190298	1.00[ASN][1000 genomes]
rs61846881	1.00[ASN][1000 genomes]
rs6482497	0.91[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482498	0.90[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702979	1.00[ASN][1000 genomes]
rs7070879	1.00[ASN][1000 genomes]
rs7091731	1.00[ASN][1000 genomes]
rs7094086	1.00[ASN][1000 genomes]
rs7099100	1.00[ASN][1000 genomes]
rs722969	1.00[ASN][1000 genomes]
rs7904866	1.00[ASN][1000 genomes]
rs7914813	0.81[GIH][hapmap];0.82[TSI][hapmap]
rs7914821	0.81[GIH][hapmap];0.82[TSI][hapmap]
rs7921299	0.87[CEU][hapmap];0.90[GIH][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921635	1.00[ASN][1000 genomes]
rs824606	1.00[ASN][1000 genomes]
rs824611	1.00[ASN][1000 genomes]
rs866089	1.00[ASN][1000 genomes]
rs866869	1.00[ASN][1000 genomes]
rs976361	0.85[GIH][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv894972	chr10:25849998-25917909	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25861600-25873800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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