Variant report
| Variant | rs12359026 |
|---|---|
| Chromosome Location | chr10:25864381-25864382 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1029178 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs11014616 | 0.89[ASN][1000 genomes] |
| rs11014622 | 0.89[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs11014623 | 0.89[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs11014625 | 0.87[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs11815379 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs11816330 | 0.89[ASN][1000 genomes] |
| rs11817700 | 0.82[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs12257236 | 0.85[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs12355530 | 0.81[EUR][1000 genomes] |
| rs17557638 | 0.89[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs4237372 | 0.89[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs4237374 | 0.80[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs4747529 | 0.83[CEU][hapmap] |
| rs4749050 | 0.87[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs57957597 | 0.89[ASN][1000 genomes] |
| rs58382847 | 0.89[ASN][1000 genomes] |
| rs7083288 | 0.82[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs7084676 | 0.85[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs7087655 | 0.89[ASN][1000 genomes] |
| rs7094805 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349863 | chr10:25614571-25946379 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv550227 | chr10:25843019-25865744 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv894972 | chr10:25849998-25917909 | Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25861600-25873800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
