Variant report

Variant	rs4747529
Chromosome Location	chr10:25836299-25836300
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25829770..25832921-chr10:25834680..25838144,5	K562	blood:
2	chr10:25835478..25839771-chr10:25841392..25844555,4	K562	blood:
3	chr10:25830363..25832921-chr10:25834879..25836972,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10458686	0.81[EUR][1000 genomes]
rs10764563	0.82[EUR][1000 genomes]
rs10764564	0.82[EUR][1000 genomes]
rs10764565	0.82[EUR][1000 genomes]
rs11014573	1.00[YRI][hapmap]
rs11014622	0.95[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014623	0.95[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014625	0.95[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11014630	0.82[EUR][1000 genomes]
rs11014631	0.82[EUR][1000 genomes]
rs12355530	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12357174	0.86[CEU][hapmap]
rs12359026	0.83[CEU][hapmap]
rs1335197	0.84[CEU][hapmap]
rs17557638	0.95[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1932147	0.82[EUR][1000 genomes]
rs4237372	0.95[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4237374	0.90[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4523593	0.87[CEU][hapmap]
rs4747532	0.86[CEU][hapmap]
rs4747533	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4749050	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58254885	0.82[EUR][1000 genomes]
rs6482497	0.87[CEU][hapmap]
rs6482498	0.87[CEU][hapmap]
rs7921299	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25820000-25836800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:25834600-25839200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr10:25835800-25836800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:25836000-25836400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr10:25836000-25836400	Active TSS	Brain Substantia Nigra	brain
6	chr10:25836000-25836600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:25836000-25836600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr10:25836000-25836600	Active TSS	Brain Hippocampus Middle	brain
9	chr10:25836000-25836800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:25836000-25836800	Active TSS	Brain Anterior Caudate	brain
11	chr10:25836000-25837000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:25836200-25836600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:25836200-25836600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:25836200-25836600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:25836200-25836600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:25836200-25836600	Flanking Active TSS	HUVEC	blood vessel
17	chr10:25836200-25836600	Flanking Active TSS	NH-A	brain
18	chr10:25836200-25836800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr10:25836200-25836800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr10:25836200-25836800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr10:25836200-25837000	Enhancers	HUES64 Cell Line	embryonic stem cell

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