Variant report

Variant	rs10458686
Chromosome Location	chr10:25877060-25877061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25867129..25868995-chr10:25875572..25877987,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10458706	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764563	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764564	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764565	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764567	0.93[ASN][1000 genomes]
rs11014622	0.86[EUR][1000 genomes]
rs11014623	0.86[EUR][1000 genomes]
rs11014625	0.86[EUR][1000 genomes]
rs11014629	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014630	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014631	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12355530	0.86[EUR][1000 genomes]
rs12413247	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17557638	0.86[EUR][1000 genomes]
rs1855672	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932147	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4237372	0.86[EUR][1000 genomes]
rs4237374	0.86[EUR][1000 genomes]
rs4747529	0.81[EUR][1000 genomes]
rs4747533	0.84[EUR][1000 genomes]
rs4749050	0.86[EUR][1000 genomes]
rs58254885	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914813	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914821	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7916181	0.82[AFR][1000 genomes]
rs976361	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv894972	chr10:25849998-25917909	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25876800-25884800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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