Variant report

Variant	rs12413247
Chromosome Location	chr10:25875838-25875839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10458686	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10458706	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764563	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764564	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764565	0.92[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764567	0.93[ASN][1000 genomes]
rs11014629	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014630	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014631	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1335197	0.82[EUR][1000 genomes]
rs1855672	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932147	0.83[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58254885	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091731	0.81[EUR][1000 genomes]
rs7914813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs976361	0.95[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv894972	chr10:25849998-25917909	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25875000-25876200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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