Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10458686	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10458706	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764563	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764564	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764565	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764567	0.92[ASN][1000 genomes]
rs11014630	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014631	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12357174	0.81[EUR][1000 genomes]
rs12413247	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1335197	0.83[EUR][1000 genomes]
rs1855672	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1932147	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4523593	0.81[EUR][1000 genomes]
rs4747532	0.81[EUR][1000 genomes]
rs58254885	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6482497	0.81[EUR][1000 genomes]
rs6482498	0.81[EUR][1000 genomes]
rs7091731	0.82[EUR][1000 genomes]
rs7914813	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7914821	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7921299	0.81[EUR][1000 genomes]
rs976361	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv894972	chr10:25849998-25917909	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25861600-25873800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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