Variant report

Variant	rs11014573
Chromosome Location	chr10:25758874-25758875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11014569	0.95[ASN][1000 genomes]
rs11014575	0.94[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11014622	1.00[YRI][hapmap]
rs11014623	1.00[YRI][hapmap]
rs11014625	1.00[YRI][hapmap]
rs1418127	0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs16925894	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs16925944	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17557638	1.00[YRI][hapmap]
rs3920656	0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4237372	1.00[YRI][hapmap]
rs4237374	1.00[YRI][hapmap]
rs4747529	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25756800-25775000	Weak transcription	K562	blood
2	chr10:25757200-25759400	Weak transcription	Placenta	Placenta
3	chr10:25757200-25769600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:25758200-25759200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:25758200-25759200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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