Variant report

Variant	rs3920656
Chromosome Location	chr10:25778322-25778323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11014569	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11014573	0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11014575	0.83[CHB][hapmap];0.95[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014578	1.00[EUR][1000 genomes]
rs1418127	1.00[ASW][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16925884	1.00[YRI][hapmap]
rs16925894	0.82[CHB][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs16925944	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25765800-25782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:25775600-25782400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:25775800-25781200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:25776600-25780800	Weak transcription	HUVEC	blood vessel
5	chr10:25777200-25780800	Weak transcription	K562	blood
6	chr10:25777400-25780200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:25777400-25780800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:25777600-25780600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:25777800-25780200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:25777800-25780800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:25778000-25782000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:25778200-25778400	Enhancers	Brain Anterior Caudate	brain
13	chr10:25778200-25778800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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